Related papers: Ranking and Unranking k-subsequence universal word…

An absent word of a word y of length n is a word that does not occur in y. It is a minimal absent word if all its proper factors occur in y. Minimal absent words have been computed in genomes of organisms from all domains of life; their…

The k-spectrum of a string is the set of all distinct substrings of length k occurring in the string. K-spectra have many applications in bioinformatics including pseudoalignment and genome assembly. The Spectral Burrows-Wheeler Transform…

Given a right-infinite word $\bf x$ over a finite alphabet $A$, the rank of $\bf x$ is the size of the smallest set $S$ of words over $A$ such that $\bf x$ can be realized as an infinite concatenation of words in $S$. We show that the…

Let $\mathcal{A}$ be a sequence of $rk$ terms which is made up of $k$ distinct integers each appearing exactly $r$ times in $\mathcal{A}$. The sum of all terms of a subsequence of $\mathcal{A}$ is called a subsequence sum of $\mathcal{A}$.…

Universal cycle for $k$-permutations is a cyclic arrangement in which each $k$-permutation appears exactly once as $k$ consecutive elements. Enumeration problem of universal cycles for $k$-permutations is discussed and one new enumerating…

Given a regular language L over an ordered alphabet $\Sigma$, the set of lexicographically smallest (resp., largest) words of each length is itself regular. Moreover, there exists an unambiguous finite-state transducer that, on a given word…

Words are sequences of letters over a finite alphabet. We study two intimately related topics for this object: quasi-randomness and limit theory. With respect to the first topic we investigate the notion of uniform distribution of letters…

We consider the number of occurrences of subwords (non-consecutive sub-sequences) in a given word. We first define the notion of subword entropy of a given word that measures the maximal number of occurrences among all possible subwords. We…

Given a string $S$ of length $N$ on a fixed alphabet of $\sigma$ symbols, a grammar compressor produces a context-free grammar $G$ of size $n$ that generates $S$ and only $S$. In this paper we describe data structures to support the…

Kosaraju in ``Computation of squares in a string'' briefly described a linear-time algorithm for computing the minimal squares starting at each position in a word. Using the same construction of suffix trees, we generalize his result and…

Given a string $S$ of length $n$, the classic string indexing problem is to preprocess $S$ into a compact data structure that supports efficient subsequent pattern queries. In the \emph{deterministic} variant the goal is to solve the string…

Incomplete rankings on a set of items $\{1,\; \ldots,\; n\}$ are orderings of the form $a_{1}\prec\dots\prec a_{k}$, with $\{a_{1},\dots a_{k}\}\subset\{1,\dots,n\}$ and $k < n$. Though they arise in many modern applications, only a few…

We prove that outer commutator words are uniformly concise, i.e. if an outer commutator word w takes m different values in a group G, then the order of the verbal subgroup w(G) is bounded by a function depending only on m and not on w or G.…

Let S be a finite set of words over an alphabet Sigma. The set S is said to be complete if every word w over the alphabet Sigma is a factor of some element of S*, i.e. w belongs to Fact(S*). Otherwise if S is not complete, we are interested…

We refine a uniform algebraic approach for deriving upper bounds on reset thresholds of synchronizing automata. We express the condition that an automaton is synchronizing in terms of linear algebra, and obtain upper bounds for the reset…

We relate binary words with a given number of subsequences to continued fractions of rational numbers with a given denominator. We deduce that there are binary strings of length $O(\log n \log \log n)$ with exactly $n$ subsequences; this…

We consider a connected undirected graph $G(n,m)$ with $n$ nodes and $m$ edges. A $k$-dominating set $D$ in $G$ is a set of nodes having the property that every node in $G$ is at most $k$ edges away from at least one node in $D$. Finding a…

Given a string $s$ of length $n$ over a general alphabet and an integer $k$, the problem is to decide whether $s$ is a concatenation of $k$ nonempty palindromes. Two previously known solutions for this problem work in time $O(kn)$ and…

We consider the problem of recognizing a vocabulary--a collection of words (sequences) over a finite alphabet--from a potential subsequence of one of its words. We assume the given subsequence is received through a deletion channel as a…

We present a generalization of first-order unification to a term algebra where variable indexing is part of the object language. We exploit variable indexing by associating some sequences of variables ($X_0,\ X_1,\ X_2,\dots$) with a…