Related papers: Ranking and Unranking k-subsequence universal word…

We consider the problem of dictionary matching in a stream. Given a set of strings, known as a dictionary, and a stream of characters arriving one at a time, the task is to report each time some string in our dictionary occurs in the…

Any infinite uniformly recurrent word ${\bf u}$ can be written as concatenation of a finite number of return words to a chosen prefix $w$ of ${\bf u}$. Ordering of the return words to $w$ in this concatenation is coded by derivated word…

Two finite words are k-binomially equivalent if each subword (i.e., subsequence) of length at most k occurs the same number of times in both words. The k-binomial complexity of an infinite word is a function that maps the integer $n\geq 0$…

Recently Kubica et al. (Inf. Process. Let., 2013) and Kim et al. (submitted to Theor. Comp. Sci.) introduced order-preserving pattern matching. In this problem we are looking for consecutive substrings of the text that have the same "shape"…

Let P be a poset and let P* be the set of all finite length words over P. Generalized subword order is the partial order on P* obtained by letting u \leq w if and only if there is a subword u' of w having the same length as u such that each…

A word $w_1w_2\cdots w_n$ is said to be up-down if $w_1 < w_2 >w_3 \cdots$. Carlitz and Scoville found the generating function for the number of up-down words over an alphabet of size $k$. Using properties of the Chebyshev polynomials we…

We consider the longest common subsequence (LCS) problem with the restriction that the common subsequence is required to consist of at least $k$ length substrings. First, we show an $O(mn)$ time algorithm for the problem which gives a…

We present an improved wavelet tree construction algorithm and discuss its applications to a number of rank/select problems for integer keys and strings. Given a string of length n over an alphabet of size $\sigma\leq n$, our method builds…

The rank and select operations over a string of length n from an alphabet of size $\sigma$ have been used widely in the design of succinct data structures. In many applications, the string itself need be maintained dynamically, allowing…

We revisit staircases for words and prove several exact as well as asymptotic results for longest left-most staircase subsequences and subwords and staircase separation number, the latter being defined as the number of consecutive maximal…

A factorization $f_1, \ldots, f_m$ of a string $w$ of length $n$ is called a repetition factorization of $w$ if $f_i$ is a repetition, i.e., $f_i$ is a form of $x^kx'$, where $x$ is a non-empty string, $x'$ is a (possibly-empty) proper…

We prove that for every integer $n > 0$ and for every alphabet $\Sigma_k$ of size $k \geq 3$, there exists a necklace of length $n$ whose Burrows-Wheeler Transform (BWT) is completely unclustered, i.e., it consists of exactly $n$ runs with…

The world's languages exhibit certain so-called typological or implicational universals; for example, Subject-Object-Verb (SOV) languages typically use postpositions. Explaining the source of such biases is a key goal of linguistics. We…

Given a word, we are interested in the structure of its contiguous subwords split into $k$ blocks of equal length, especially in the homogeneous and anti-homogeneous cases. We introduce the notion of $(\mu_1,\dots,\mu_k)$-block-patterns,…

We examine words w satisfying the following property: if x is a subword of w and |x| is at least k for some fixed k, then the reversal of x is not a subword of w.

Minimizer schemes, or just minimizers, are a very important computational primitive in sampling and sketching biological strings. Assuming a fixed alphabet of size $\sigma$, a minimizer is defined by two integers $k,w\ge2$ and a total order…

Let $\mathfrak A$ be an alphabet and $W$ be a set of words in the free monoid ${\mathfrak A}^*$. Let $S(W)$ denote the Rees quotient over the ideal of ${\mathfrak A}^*$ consisting of all words that are not subwords of words in $W$. A set of…

We study the problem of computing a longest increasing subsequence in a sequence $S$ of $n$ distinct elements in the presence of persistent comparison errors. In this model, every comparison between two elements can return the wrong result…

We consider words $w$ over the alphabet $\Sigma=\{0,1,2\}$. It is shown that there are irreducibly square-free words of all lengths $n$ except 4,5,7 and 12. Such a word is square-free (i.e., it has no repetitions $uu$ as factors), but by…

Let L be an infinite regular language on a totally ordered alphabet (A,<). Feeding a finite deterministic automaton (with output) with the words of L enumerated lexicographically with respect to < leads to an infinite sequence over the…