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The present lack of a stable method to compare persistent homology groups with torsion is a relevant problem in current research about Persistent Homology and its applications in Pattern Recognition. In this paper we introduce a…

Algebraic Topology · Mathematics 2010-12-21 Patrizio Frosini

Many applications in pattern recognition represent patterns as a geometric graph. The geometric graph distance (GGD) has recently been studied as a meaningful measure of similarity between two geometric graphs. Since computing the GGD is…

Computational Geometry · Computer Science 2023-06-12 Sushovan Majhi

Measuring similarity between complex objects is a fundamental task in many scientific fields. When objects are represented as graphs, graph similarity/distance measures offer a powerful framework for quantifying structural resemblance.…

Combinatorics · Mathematics 2025-09-30 Matthias Dehmer , Izudin Redžepović , Niko Tratnik , Petra Žigert Pleteršek

A wide range of data that appear in scientific experiments and simulations are multivariate or multifield in nature, consisting of multiple scalar fields. Topological feature search of such data aims to reveal important properties useful to…

Computational Geometry · Computer Science 2024-06-06 Tripti Agarwal , Amit Chattopadhyay , Vijay Natarajan

This paper presents a robust and efficient method for tracking topological features in time-varying scalar data. Structures are tracked based on the optimal matching between persistence diagrams with respect to the Wasserstein metric. This…

Image and Video Processing · Electrical Eng. & Systems 2019-01-03 Maxime Soler , Mélanie Plainchault , Bruno Conche , Julien Tierny

Persistent homology has emerged as a popular technique for the topological simplification of big data, including biomolecular data. Multidimensional persistence bears considerable promise to bridge the gap between geometry and topology.…

Biomolecules · Quantitative Biology 2014-12-25 Kelin Xia , Guo-Wei Wei

Recent progress towards unraveling the hidden geometric organization of real multiplexes revealed significant correlations across the hyperbolic node coordinates in different network layers, which facilitated applications like trans-layer…

Social and Information Networks · Computer Science 2019-01-29 Fragkiskos Papadopoulos , Kaj-Kolja Kleineberg

We introduce persistence spheres, a novel functional representation of persistence diagrams. Unlike existing embeddings (such as persistence images, landscapes, or kernel methods), persistence spheres provide a bi-continuous mapping: they…

Machine Learning · Computer Science 2025-10-01 Matteo Pegoraro

Given a map $f:X \to M$ from a topological space $X$ to a metric space $M$, a decorated Reeb space consists of the Reeb space, together with an attribution function whose values recover geometric information lost during the construction of…

Metric Geometry · Mathematics 2024-03-21 Justin Curry , Washington Mio , Tom Needham , Osman Berat Okutan , Florian Russold

Time series are high-dimensional and complex data objects, making their efficient search and indexing a longstanding challenge in data mining. Building on a recently introduced similarity measure, namely Multiscale Dubuc Distance (MDD),…

Machine Learning · Computer Science 2025-10-28 Azim Ahmadzadeh , Mahsa Khazaei , Elaina Rohlfing

We propose a methodology for intercomparing climate models and evaluating their performance against benchmarks based on the use of the Wasserstein distance (WD). This distance provides a rigorous way to measure quantitatively the difference…

Atmospheric and Oceanic Physics · Physics 2020-11-16 Gabriele Vissio , Valerio Lembo , Valerio Lucarini , Michael Ghil

This paper presents a spectral framework for quantifying the differentiation between graph data samples by introducing a novel metric named Graph Geodesic Distance (GGD). For two different graphs with the same number of nodes, our framework…

Machine Learning · Computer Science 2025-08-18 Soumen Sikder Shuvo , Ali Aghdaei , Zhuo Feng

The \textit{biharmonic distance} (BD) is a fundamental metric that measures the distance of two nodes in a graph. It has found applications in network coherence, machine learning, and computational graphics, among others. In spite of BD's…

Social and Information Networks · Computer Science 2024-08-27 Changan Liu , Ahad N. Zehmakan , Zhongzhi Zhang

Topological data analysis provides a multiscale description of the geometry and topology of quantitative data. The persistence landscape is a topological summary that can be easily combined with tools from statistics and machine learning.…

Computational Geometry · Computer Science 2017-07-21 Peter Bubenik , Pawel Dlotko

Automatic evaluation of the goodness of Generative Adversarial Networks (GANs) has been a challenge for the field of machine learning. In this work, we propose a distance complementary to existing measures: Topology Distance (TD), the main…

Machine Learning · Computer Science 2020-02-28 Danijela Horak , Simiao Yu , Gholamreza Salimi-Khorshidi

Persistence diagrams are common descriptors of the topological structure of data appearing in various classification and regression tasks. They can be generalized to Radon measures supported on the birth-death plane and endowed with an…

Computational Geometry · Computer Science 2022-12-19 Alex Elchesen , Iryna Hartsock , Jose A. Perea , Tatum Rask

Exploiting geometric structure to improve the asymptotic complexity of discrete assignment problems is a well-studied subject. In contrast, the practical advantages of using geometry for such problems have not been explored. We implement…

Computational Geometry · Computer Science 2016-06-13 Michael Kerber , Dmitriy Morozov , Arnur Nigmetov

Multidimensional fitting (MDF) method is a multivariate data analysis method recently developed and based on the fitting of distances. Two matrices are available: one contains the coordinates of the points and the second contains the…

Data quality is crucial for the successful training, generalization and performance of machine learning models. We propose to measure the quality of a subset concerning the dataset it represents, using topological data analysis techniques.…

Algebraic Topology · Mathematics 2024-10-01 Álvaro Torras-Casas , Eduardo Paluzo-Hidalgo , Rocio Gonzalez-Diaz

High-dimensional data often exhibit hierarchical structures in both modes: samples and features. Yet, most existing approaches for hierarchical representation learning consider only one mode at a time. In this work, we propose an…

Machine Learning · Computer Science 2025-10-23 Ya-Wei Eileen Lin , Ronald R. Coifman , Gal Mishne , Ronen Talmon
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