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The \emph{distance-number} of a graph $G$ is the minimum number of distinct edge-lengths over all straight-line drawings of $G$ in the plane. This definition generalises many well-known concepts in combinatorial geometry. We consider the…

Combinatorics · Mathematics 2008-09-09 Paz Carmi , Vida Dujmović , Pat Morin , David R. Wood

Collections of probability distributions arise in a variety of applications ranging from user activity pattern analysis to brain connectomics. In practice these distributions can be defined over diverse domain types including finite…

Methodology · Statistics 2023-06-16 Raif Rustamov , Subhabrata Majumdar

Data consisting of a graph with a function mapping into $\mathbb{R}^d$ arise in many data applications, encompassing structures such as Reeb graphs, geometric graphs, and knot embeddings. As such, the ability to compare and cluster such…

Computational Geometry · Computer Science 2025-07-17 Erin W. Chambers , Elizabeth Munch , Sarah Percival , Bei Wang

In the machine learning field, dimensionality reduction is an important task. It mitigates the undesired properties of high-dimensional spaces to facilitate classification, compression, and visualization of high-dimensional data. During the…

Machine Learning · Computer Science 2019-11-19 Mohammed Elhenawy , Mahmoud Masoud , Sebastian Glaser , Andry Rakotonirainy

This paper is a companion paper to [Lipman and Daubechies 2011]. We provide numerical procedures and algorithms for computing the alignment of and distance between two disk type surfaces. We provide a convergence analysis of the discrete…

Numerical Analysis · Mathematics 2014-02-18 Yaron Lipman , Jesus Puente , Ingrid Daubechies

We consider the setting of Reeb graphs of piecewise linear functions and study distances between them that are stable, meaning that functions which are similar in the supremum norm ought to have similar Reeb graphs. We define an edit…

Algebraic Topology · Mathematics 2021-02-09 Ulrich Bauer , Claudia Landi , Facundo Memoli

An important operation in geometry processing is finding the correspondences between pairs of shapes. The Gromov-Hausdorff distance, a measure of dissimilarity between metric spaces, has been found to be highly useful for nonrigid shape…

Computer Vision and Pattern Recognition · Computer Science 2013-11-25 Alon Shtern , Ron Kimmel

Contemporary color difference (CD) measures for photographic images typically operate by comparing co-located pixels, patches in a ``perceptually uniform'' color space, or features in a learned latent space. Consequently, these measures…

Computer Vision and Pattern Recognition · Computer Science 2024-07-16 Jiaqi He , Zhihua Wang , Leon Wang , Tsein-I Liu , Yuming Fang , Qilin Sun , Kede Ma

Most Machine Learning (ML) methods, from clustering to classification, rely on a distance function to describe relationships between datapoints. For complex datasets it is hard to avoid making some arbitrary choices when defining a distance…

Machine Learning · Statistics 2016-07-04 Gina Gruenhage , Manfred Opper , Simon Barthelme

Multidimensional scaling (MDS) is a widely used approach to representing high-dimensional, dependent data. MDS works by assigning each observation a location on a low-dimensional geometric manifold, with distance on the manifold…

Methodology · Statistics 2023-08-16 Bolun Liu , Shane Lubold , Adrian E. Raftery , Tyler H. McCormick

Distances have a ubiquitous role in persistent homology, from the direct comparison of homological representations of data to the definition and optimization of invariants. In this article we introduce a family of parametrized pseudometrics…

Algebraic Topology · Mathematics 2024-08-23 Jens Agerberg , Andrea Guidolin , Isaac Ren , Martina Scolamiero

We prove that persistence diagrams with the p-Wasserstein distance form the universal p-subadditive commutative monoid on an underlying metric space with a distinguished subset. This result applies to persistence diagrams, barcodes, and to…

Algebraic Topology · Mathematics 2025-02-19 Peter Bubenik , Alex Elchesen

Merge trees are a type of graph-based topological summary that tracks the evolution of connected components in the sublevel sets of scalar functions. They enjoy widespread applications in data analysis and scientific visualization. In this…

Computational Geometry · Computer Science 2022-02-03 Ellen Gasparovic , Elizabeth Munch , Steve Oudot , Katharine Turner , Bei Wang , Yusu Wang

In phylogenetics, distances are often used to measure the incongruence between a pair of phylogenetic trees that are reconstructed by different methods or using different regions of genome. Motivated by the maximum parsimony principle in…

Populations and Evolution · Quantitative Biology 2016-07-08 Steven Kelk , Mareike Fischer , Vincent Moulton , Taoyang Wu

This work incorporates topological features via persistence diagrams to classify point cloud data arising from materials science. Persistence diagrams are multisets summarizing the connectedness and holes of given data. A new distance on…

Machine Learning · Statistics 2019-11-11 Vasileios Maroulas , Cassie Putman Micucci , Adam Spannaus

We define, analyze, and give efficient algorithms for two kinds of distance measures for rooted and unrooted phylogenies. For rooted trees, our measures are based on the topologies the input trees induce on triplets; that is, on…

Data Structures and Algorithms · Computer Science 2009-06-30 Mukul S. Bansal , Jianrong Dong , David Fernández-Baca

The graph edit distance (GED) is a well-established distance measure widely used in many applications. However, existing methods for the GED computation suffer from several drawbacks including oversized search space, huge memory…

Data Structures and Algorithms · Computer Science 2017-10-02 Xiaoyang Chen , Hongwei Huo , Jun Huan , Jeffrey Scott Vitter

Merge trees are a common topological descriptor for data with a hierarchical component, such as terrains and scalar fields. The interleaving distance, in turn, is a common distance for comparing merge trees. However, the interleaving…

Computational Geometry · Computer Science 2025-01-13 Thijs Beurskens , Tim Ophelders , Bettina Speckmann , Kevin Verbeek

Resistance distance computation is a fundamental problem in graph analysis, yet existing random walk-based methods are limited to approximate solutions and suffer from poor efficiency on small-treewidth graphs (e.g., road networks). In…

Databases · Computer Science 2025-09-08 Meihao Liao , Yueyang Pan , Rong-Hua Li , Guoren Wang

Whether comparing networks to each other or to random expectation, measuring dissimilarity is essential to understanding the complex phenomena under study. However, determining the structural dissimilarity between networks is an ill-defined…

Social and Information Networks · Computer Science 2018-07-26 Leo Torres , Pablo Suarez-Serrato , Tina Eliassi-Rad