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Learning new representations of 3D point clouds is an active research area in 3D vision, as the order-invariant point cloud structure still presents challenges to the design of neural network architectures. Recent works explored learning…

Computer Vision and Pattern Recognition · Computer Science 2022-07-18 Yusuf H. Sahin , Alican Mertan , Gozde Unal

The detection of nuclei and cells in histology images is of great value in both clinical practice and pathological studies. However, multiple reasons such as morphological variations of nuclei or cells make it a challenging task where…

Computer Vision and Pattern Recognition · Computer Science 2021-06-28 Yibao Sun , Xingru Huang , Huiyu Zhou , Qianni Zhang

Spatial transcriptomics enables spatial gene expression profiling, motivating computational models that capture spatially conditioned regulatory relationships. We introduce SAGE-FM, a lightweight spatial transcriptomics foundation model…

Machine Learning · Computer Science 2026-01-23 Xianghao Zhan , Jingyu Xu , Yuanning Zheng , Zinaida Good , Olivier Gevaert

Live fish recognition is one of the most crucial elements of fisheries survey applications where vast amount of data are rapidly acquired. Different from general scenarios, challenges to underwater image recognition are posted by poor image…

Computer Vision and Pattern Recognition · Computer Science 2016-03-08 Meng-Che Chuang , Jenq-Neng Hwang , Kresimir Williams

Semantic segmentation for robotic systems can enable a wide range of applications, from self-driving cars and augmented reality systems to domestic robots. We argue that a spherical representation is a natural one for egocentric…

Robotics · Computer Science 2022-10-26 Lukas Bernreiter , Lionel Ott , Roland Siegwart , Cesar Cadena

In this paper we present our research on the optimisation of a deep neural network for 3D object detection in a point cloud. Techniques like quantisation and pruning available in the Brevitas and PyTorch tools were used. We performed the…

Computer Vision and Pattern Recognition · Computer Science 2021-03-30 Joanna Stanisz , Konrad Lis , Tomasz Kryjak , Marek Gorgon

Modeling the localized intensive deformation in a damaged solid requires highly refined discretization for accurate prediction, which significantly increases the computational cost. Although adaptive model refinement can be employed for…

Computational Engineering, Finance, and Science · Computer Science 2022-05-18 Jonghyuk Baek , Jiun-Shyan Chen , Kristen Susuki

Place recognition gives a SLAM system the ability to correct cumulative errors. Unlike images that contain rich texture features, point clouds are almost pure geometric information which makes place recognition based on point clouds…

Computer Vision and Pattern Recognition · Computer Science 2021-07-13 Lin Li , Xin Kong , Xiangrui Zhao , Tianxin Huang , Yong Liu

RNA structure determination is essential for understanding its biological functions. However, the reconstruction process often faces challenges, such as atomic clashes, which can lead to inaccurate models. To address these challenges, we…

Biomolecules · Quantitative Biology 2026-03-04 Menghao Wu , Zhigang Yao

Spatial Transcriptomics (ST) is a method that captures gene expression profiles aligned with spatial coordinates. The discrete spatial distribution and the super-high dimensional sequencing results make ST data challenging to be modeled…

Machine Learning · Computer Science 2025-05-08 Qingtian Zhu , Yumin Zheng , Yuling Sang , Yifan Zhan , Ziyan Zhu , Jun Ding , Yinqiang Zheng

Position emission tomography (PET) is widely used in clinics and research due to its quantitative merits and high sensitivity, but suffers from low signal-to-noise ratio (SNR). Recently convolutional neural networks (CNNs) have been widely…

Image and Video Processing · Electrical Eng. & Systems 2023-12-12 Se-In Jang , Tinsu Pan , Ye Li , Pedram Heidari , Junyu Chen , Quanzheng Li , Kuang Gong

Point cloud is an important type of geometric data structure. Due to its irregular format, most researchers transform such data to regular 3D voxel grids or collections of images. This, however, renders data unnecessarily voluminous and…

Computer Vision and Pattern Recognition · Computer Science 2017-04-12 Charles R. Qi , Hao Su , Kaichun Mo , Leonidas J. Guibas

Manually annotating complex scene point cloud datasets is both costly and error-prone. To reduce the reliance on labeled data, a new model called SnapshotNet is proposed as a self-supervised feature learning approach, which directly works…

Computer Vision and Pattern Recognition · Computer Science 2022-01-14 Xingye Li , Ling Zhang , Zhigang Zhu

Numerous significant progress on fisheye image rectification has been achieved through CNN. Nevertheless, constrained by a fixed receptive field, the global distribution and the local symmetry of the distortion have not been fully…

Computer Vision and Pattern Recognition · Computer Science 2022-08-02 Shangrong Yang , Chunyu Lin , Kang Liao , Yao Zhao

In fisheye images, rich distinct distortion patterns are regularly distributed in the image plane. These distortion patterns are independent of the visual content and provide informative cues for rectification. To make the best of such…

Computer Vision and Pattern Recognition · Computer Science 2023-08-21 Hao Feng , Wendi Wang , Jiajun Deng , Wengang Zhou , Li Li , Houqiang Li

Circular RNAs (circRNAs) are important components of the non-coding RNA regulatory network. Previous circRNA identification primarily relies on high-throughput RNA sequencing (RNA-seq) data combined with alignment-based algorithms that…

Machine Learning · Computer Science 2025-07-14 Tianyou Jiang

Motivation: Spliced alignment refers to the alignment of messenger RNA (mRNA) or protein sequences to eukaryotic genomes. It plays a critical role in gene annotation and the study of gene functions. Accurate spliced alignment demands…

Genomics · Quantitative Biology 2025-09-23 Siying Yang , Neng Huang , Heng Li

Spatial transcriptomics (ST) provides spatially resolved measurements of gene expression, enabling characterization of the molecular landscape of human tissue beyond histological assessment as well as localized readouts that can be aligned…

Computer Vision and Pattern Recognition · Computer Science 2026-02-17 Konstantin Hemker , Andrew H. Song , Cristina Almagro-Pérez , Guillaume Jaume , Sophia J. Wagner , Anurag Vaidya , Nikola Simidjievski , Mateja Jamnik , Faisal Mahmood

Predictive modeling is useful but very challenging in biological image analysis due to the high cost of obtaining and labeling training data. For example, in the study of gene interaction and regulation in Drosophila embryogenesis, the…

Machine Learning · Computer Science 2020-10-21 Lei Cai , Zhengyang Wang , Rob Kulathinal , Sudhir Kumar , Shuiwang Ji

Fine-grained classification is challenging due to the difficulty of finding discriminative features. Finding those subtle traits that fully characterize the object is not straightforward. To handle this circumstance, we propose a novel…

Computer Vision and Pattern Recognition · Computer Science 2018-09-05 Ze Yang , Tiange Luo , Dong Wang , Zhiqiang Hu , Jun Gao , Liwei Wang