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In this paper, we consider the problem of disease diagnosis. Unlike the conventional learning paradigm that treats labels independently, we propose a knowledge-enhanced framework, that enables training visual representation with the…

Computer Vision and Pattern Recognition · Computer Science 2023-02-28 Chaoyi Wu , Xiaoman Zhang , Yanfeng Wang , Ya Zhang , Weidi Xie

Knowledge based dialogue systems have attracted increasing research interest in diverse applications. However, for disease diagnosis, the widely used knowledge graph is hard to represent the symptom-symptom relations and symptom-disease…

Computation and Language · Computer Science 2020-12-29 Xinyan Zhao , Liangwei Chen , Huanhuan Chen

Knowledge Graphs (KGs) are widely employed in artificial intelligence applications, such as question-answering and recommendation systems. However, KGs are frequently found to be incomplete. While much of the existing literature focuses on…

Artificial Intelligence · Computer Science 2024-06-28 Sakher Khalil Alqaaidi , Krzysztof Kochut

Knowledge graph completion (KGC) can be framed as a 3-order binary tensor completion task. Tensor decomposition-based (TDB) models have demonstrated strong performance in KGC. In this paper, we provide a summary of existing TDB models and…

Machine Learning · Computer Science 2025-06-04 Changyi Xiao , Yixin Cao

Knowledge Graphs (KGs) have seen increasing use across various domains -- from biomedicine and linguistics to general knowledge modelling. In order to facilitate the analysis of knowledge graphs, Knowledge Graph Embeddings (KGEs) have been…

Machine Learning · Computer Science 2024-12-20 Jeffrey Sardina , John D. Kelleher , Declan O'Sullivan

Knowledge Graphs (KGs) and their machine learning counterpart, Knowledge Graph Embedding Models (KGEMs), have seen ever-increasing use in a wide variety of academic and applied settings. In particular, KGEMs are typically applied to KGs to…

Machine Learning · Computer Science 2024-12-16 Jeffrey Sardina , John D. Kelleher , Declan O'Sullivan

We present an effective graph neural network (GNN)-based knowledge graph embedding model, which we name WGE, to capture entity- and relation-focused graph structures. Given a knowledge graph, WGE builds a single undirected entity-focused…

Computation and Language · Computer Science 2023-03-14 Vinh Tong , Dai Quoc Nguyen , Dinh Phung , Dat Quoc Nguyen

Understanding disease similarity is critical for advancing diagnostics, drug discovery, and personalized treatment strategies. We present PhenoGnet, a novel graph-based contrastive learning framework designed to predict disease similarity…

Genomics · Quantitative Biology 2025-09-18 Ranga Baminiwatte , Kazi Jewel Rana , Aaron J. Masino

Recent studies have highlighted the effectiveness of tensor decomposition methods in the Temporal Knowledge Graphs Embedding (TKGE) task. However, we found that inherent heterogeneity among factor tensors in tensor decomposition…

Machine Learning · Computer Science 2025-02-20 Jiang Li , Xiangdong Su , Guanglai Gao

Link prediction is critical for the application of incomplete knowledge graph (KG) in the downstream tasks. As a family of effective approaches for link predictions, embedding methods try to learn low-rank representations for both entities…

Computation and Language · Computer Science 2019-11-22 Canran Xu , Ruijiang Li

Numerous Graph Neural Networks (GNNs) have been developed to tackle the challenge of Knowledge Graph Embedding (KGE). However, many of these approaches overlook the crucial role of relation information and inadequately integrate it with…

Machine Learning · Computer Science 2024-09-24 Peyman Baghershahi , Reshad Hosseini , Hadi Moradi

Multi-scale biomedical knowledge networks are expanding with emerging experimental technologies that generates multi-scale biomedical big data. Link prediction is increasingly used especially in bipartite biomedical networks to identify…

Social and Information Networks · Computer Science 2022-02-25 Jinjiang Guo , Jie Li , Dawei Leng , Lurong Pan

Knowledge Graph Embedding (KGE) models are used to learn continuous representations of entities and relations. A key task in the literature is predicting missing links between entities. However, Knowledge Graphs are not just sets of links…

Artificial Intelligence · Computer Science 2023-08-28 Thiviyan Thanapalasingam , Emile van Krieken , Peter Bloem , Paul Groth

Graphs or networks are a very convenient way to represent data with lots of interaction. Recently, Machine Learning on Graph data has gained a lot of traction. In particular, vertex classification and missing edge detection have very…

Machine Learning · Computer Science 2020-09-07 Simon Brandeis , Adrian Jarret , Pierre Sevestre

In the last few years, the solution to Knowledge Graph (KG) completion via learning embeddings of entities and relations has attracted a surge of interest. Temporal KGs(TKGs) extend traditional Knowledge Graphs (KGs) by associating static…

Artificial Intelligence · Computer Science 2023-02-14 Zhongwu Chen , Chengjin Xu , Fenglong Su , Zhen Huang , You Dou

Knowledge Graph (KG) completion research usually focuses on densely connected benchmark datasets that are not representative of real KGs. We curate two KG datasets that include biomedical and encyclopedic knowledge and use an existing…

Machine Learning · Computer Science 2021-06-15 Justin Lovelace , Denis Newman-Griffis , Shikhar Vashishth , Jill Fain Lehman , Carolyn Penstein Rosé

Knowledge graph (KG) entity typing aims at inferring possible missing entity type instances in KG, which is a very significant but still under-explored subtask of knowledge graph completion. In this paper, we propose a novel approach for KG…

Computation and Language · Computer Science 2020-07-22 Yu Zhao , Anxiang Zhang , Ruobing Xie , Kang Liu , Xiaojie Wang

Background : Knowledge is evolving over time, often as a result of new discoveries or changes in the adopted methods of reasoning. Also, new facts or evidence may become available, leading to new understandings of complex phenomena. This is…

Computation and Language · Computer Science 2023-04-24 Ayoub Harnoune , Maryem Rhanoui , Mounia Mikram , Siham Yousfi , Zineb Elkaimbillah , Bouchra El Asri

Knowledge graph completion (KGC) aims to solve the incompleteness of knowledge graphs (KGs) by predicting missing links from known triples, numbers of knowledge graph embedding (KGE) models have been proposed to perform KGC by learning…

Artificial Intelligence · Computer Science 2023-06-14 Jining Wang , Delai Qiu , YouMing Liu , Yining Wang , Chuan Chen , Zibin Zheng , Yuren Zhou

Knowledge graph (KG) completion aims to fill the missing facts in a KG, where a fact is represented as a triple in the form of $(subject, relation, object)$. Current KG completion models compel two-thirds of a triple provided (e.g.,…

Machine Learning · Computer Science 2019-01-01 Lingbing Guo , Qingheng Zhang , Weiyi Ge , Wei Hu , Yuzhong Qu