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In bidisperse particle mixtures varying in size or density alone, large particles rise (driven by percolation) and heavy particles sink (driven by buoyancy). When the two particle species differ from each other in both size and density, the…

Soft Condensed Matter · Physics 2021-06-09 Yifei Duan , Paul B. Umbanhowar , Richard M. Lueptow

Nonlocal interactions are ubiquitous in nature and play a central role in many biological systems. In this paper, we perform a bifurcation analysis of a widely-applicable advection-diffusion model with nonlocal advection terms describing…

Analysis of PDEs · Mathematics 2023-05-25 Valeria Giunta , Thomas Hillen , Mark A. Lewis , Jonathan R. Potts

We present three examples of delayed bifurcations for spike solutions of reaction-diffusion systems. The delay effect results as the system passes slowly from a stable to an unstable regime, and was previously analysed in the context of…

Pattern Formation and Solitons · Physics 2015-06-18 Justin C. Tzou , Michael J. Ward , Theodore Kolokolnikov

Dynamical systems with a coupled cell network structure can display synchronous solutions, spectral degeneracies and anomalous bifurcation behavior. We explain these phenomena here for homogeneous networks, by showing that every homogeneous…

Dynamical Systems · Mathematics 2013-04-05 Bob Rink , Jan Sanders

We study spontaneous symmetry breaking in a system of two parallel quasi-one-dimensional traps, equipped with optical lattices (OLs) and filled with a Bose-Einstein condensate (BEC). The cores are linearly coupled by tunneling. Analysis of…

Pattern Formation and Solitons · Physics 2009-11-13 Arthur Gubeskys , Boris A. Malomed

There are many processes in cell biology that can be modeled in terms of particles diffusing in a two-dimensional (2D) or three-dimensional (3D) bounded domain $\Omega \subset \R^d$ containing a set of small subdomains or interior…

Analysis of PDEs · Mathematics 2024-07-09 Paul C Bressloff

When two Turing modes interact, i.e., Turing-Turing bifurcation occurs, superposition patterns revealing complex dynamical phenomena appear. In this paper, superposition patterns resulting from Turing-Turing bifurcation are investigated in…

Dynamical Systems · Mathematics 2022-04-12 Xun Cao , Weihua Jiang

In many biological situations, a species arriving from a remote source diffuses in a domain confined between two parallel surfaces until it finds a binding partner. Since such a geometric shape falls in between two- and three-dimensional…

Chemical Physics · Physics 2019-11-05 Denis S. Grebenkov , Diego Krapf

This paper studies a two microbial species model in competition for a single resource in the chemostat including general interspecific density-dependent growth rates with distinct removal rates for each species. We give the necessary and…

Dynamical Systems · Mathematics 2024-01-15 Tahani Mtar , Radhouane Fekih-Salem

In this paper we review several approaches to mathematical modeling of simple battery cells and develop these ideas further with emphasis on charge recovery and the response behavior of batteries to given external load. We focus on models…

Probability · Mathematics 2016-04-04 Ingemar Kaj , Victorien Konané

We examine one- and two-dimensional (1D and 2D) models of linearly coupled lattices of the discrete-nonlinear-Schr{\"{o}}dinger type. Analyzing ground states of the systems with equal powers in the two components, we find a…

Pattern Formation and Solitons · Physics 2010-12-10 G. Herring , P. G. Kevrekidis , B. A. Malomed , R. Carretero-Gonzalez , D. J. Frantzeskakis

The transition states and dividing surfaces used to find rate constants for bimolecular reactions are shown to undergo qualitative changes, known as Morse bifurcations, and to exist for a large range of energies, not just immediately above…

Chemical Physics · Physics 2015-11-12 Robert S. MacKay , Dayal C. Strub

We investigate the structure and stability of the steady states for a bacterial colony model with density-suppressed motility. We treat the growth rate of bacteria as a bifurcation parameter to explore the local and global structure of the…

Analysis of PDEs · Mathematics 2020-05-15 Manjun Ma , Peng Xia , Qifeng Zhang , Matti Vuorinen

Granular hydrodynamics predicts symmetry-breaking instability in a two-dimensional (2D) ensemble of nearly elastically colliding smooth hard spheres driven, at zero gravity, by a rapidly vibrating sidewall. Super- and subcritical…

Soft Condensed Matter · Physics 2009-11-07 Eli Livne , Baruch Meerson , Pavel V. Sasorov

This paper investigates a reaction-advection-diffusion system modeling interspecific competition between two species over bounded domains. The kinetic terms are assumed to satisfy the Beddington-DeAngelis functional responses. We consider…

Analysis of PDEs · Mathematics 2016-03-29 Ling Jin , Qi Wang , Zengyan Zhang

In multicellular organisms, several cell states coexist. For determining each cell type, cell-cell interactions are often essential, in addition to intracellular gene expression dynamics. Based on dynamical systems theory, we propose a…

Cell Behavior · Quantitative Biology 2007-12-05 Akihiko Nakajima , Kunihiko Kaneko

Several cellular activities, such as directed cell migration, are coordinated by an intricate network of biochemical reactions which lead to a polarised state of the cell, in which cellular symmetry is broken, causing the cell to have a…

Cell Behavior · Quantitative Biology 2018-09-13 Davide Cusseddu , Leah Edelstein-Keshet , John A. Mackenzie , Stéphanie Portet , Anotida Madzvamuse

To explain the differentiation of stem cells in terms of dynamical systems theory, models of interacting cells with intracellular protein expression dynamics are analyzed and simulated. Simulations were carried out for all possible protein…

Cell Behavior · Quantitative Biology 2015-06-15 Yusuke Goto , Kunihiko Kaneko

Cell polarization is a critical process that separates molecular species into two distinct regions in prokaryotic and eukaryotic cells, guiding biological processes such as cell division and cell differentiation. Although several underlying…

Molecular Networks · Quantitative Biology 2025-01-28 Yixuan Chen , Guoye Guan , Lei-Han Tang , Chao Tang

In the context of a spatially extended model for the electrical activity in a pituitary lactotroph cell line, we establish that two delayed bifurcation phenomena from ODEs ---folded node canards and slow passage through Hopf bifurcations---…

Dynamical Systems · Mathematics 2018-04-16 Tasso J. Kaper , Theodore Vo