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Single-cell RNA sequencing (scRNA-seq) is a fast growing approach to measure the genome-wide transcriptome of many individual cells in parallel, but results in noisy data with many dropout events. Existing methods to learn molecular…

Quantitative Methods · Quantitative Biology 2018-02-27 Beyrem Khalfaoui , Jean-Philippe Vert

Self-supervised learning has demonstrated considerable potential in hyperspectral representation, yet its application in cross-domain transfer scenarios remains under-explored. Existing methods, however, still rely on source domain…

Computer Vision and Pattern Recognition · Computer Science 2026-01-27 Jianshu Chao , Tianhua Lv , Qiqiong Ma , Yunfei Qiu , Li Fang , Huifang Shen , Wei Yao

This paper addresses the problem of single snapshot Direction-of-Arrival (DOA) estimation, which is of great importance in a wide-range of applications including automotive radar. A popular approach to achieving high angular resolution when…

Signal Processing · Electrical Eng. & Systems 2024-03-12 Yinyan Bu , Robin Rajamäki , Anand Dabak , Rajan Narasimha , Anil Mani , Piya Pal

Optical Character Recognition (OCR) is a fundamental task for digitizing information, serving as a critical bridge between visual data and textual understanding. While modern Vision-Language Models (VLM) have achieved high accuracy in this…

Computer Vision and Pattern Recognition · Computer Science 2026-05-28 Sean Man , Gilad Deutch , Roy Ganz , Roi Ronen , Shahar Tsiper , Shai Mazor , Niv Nayman

Spatial resolution in optical microscopy has traditionally been treated as a fixed parameter of the optical system. Here, we present an approach to enhance transverse resolution in beam-scanned optical coherence tomography (OCT) beyond its…

Optics · Physics 2021-10-22 Nichaluk Leartprapun , Steven G. Adie

Machine learning algorithms have the potential to improve patient outcomes in digital pathology. However, generalization of these tools is currently limited by sensitivity to variations in tissue preparation, staining procedures and…

We introduce SONO, a novel method leveraging Second-Order Neural Ordinary Differential Equations (Second-Order NODEs) to enhance cross-modal few-shot learning. By employing a simple yet effective architecture consisting of a Second-Order…

Computer Vision and Pattern Recognition · Computer Science 2024-12-23 Yi Zhang , Chun-Wun Cheng , Junyi He , Zhihai He , Carola-Bibiane Schönlieb , Yuyan Chen , Angelica I Aviles-Rivero

Cross-modal alignment is an effective approach to improving visual classification. Existing studies typically enforce a one-step mapping that uses deep neural networks to project the visual features to mimic the distribution of textual…

Computer Vision and Pattern Recognition · Computer Science 2025-05-27 Zixuan Li , Lei Meng , Guoqing Chao , Wei Wu , Xiaoshuo Yan , Yimeng Yang , Zhuang Qi , Xiangxu Meng

Spatial transcriptomics (ST) has emerged as a powerful technology for bridging histology imaging with gene expression profiling. However, its application has been limited by low throughput and the need for specialized experimental…

Computer Vision and Pattern Recognition · Computer Science 2025-06-09 Tinglin Huang , Tianyu Liu , Mehrtash Babadi , Wengong Jin , Rex Ying

Automated surgical gesture recognition is of great importance in robot-assisted minimally invasive surgery. However, existing methods assume that training and testing data are from the same domain, which suffers from severe performance…

Computer Vision and Pattern Recognition · Computer Science 2021-07-20 Xueying Shi , Yueming Jin , Qi Dou , Jing Qin , Pheng-Ann Heng

Feature-based visual simultaneous localization and mapping (SLAM) methods only estimate the depth of extracted features, generating a sparse depth map. To solve this sparsity problem, depth completion tasks that estimate a dense depth from…

Computer Vision and Pattern Recognition · Computer Science 2022-05-02 Jinwoo Jeon , Hyunjun Lim , Dong-Uk Seo , Hyun Myung

Medical imaging is nowadays a pillar in diagnostics and therapeutic follow-up. Current research tries to integrate established - but ionizing - tomographic techniques with technologies offering reduced radiation exposure. Diffuse Optical…

Numerical Analysis · Mathematics 2024-02-15 Alessandro Benfenati , Paola Causin , Martina Quinteri

Spatial transcriptomics (ST) provides essential spatial context by mapping gene expression within tissue, enabling detailed study of cellular heterogeneity and tissue organization. However, aligning ST data with histology images poses…

The recent Segment Anything Model (SAM) represents a significant breakthrough in scaling segmentation models, delivering strong performance across various downstream applications in the RGB modality. However, directly applying SAM to…

Computer Vision and Pattern Recognition · Computer Science 2024-12-06 Chenyang Zhu , Bin Xiao , Lin Shi , Shoukun Xu , Xu Zheng

Recent advances in self-supervised learning (SSL) have shown tremendous potential for learning 3D point cloud representations without human annotations. However, SSL for 3D point clouds still faces critical challenges due to irregular…

Computer Vision and Pattern Recognition · Computer Science 2025-12-15 Mohamed Abdelsamad , Michael Ulrich , Bin Yang , Miao Zhang , Yakov Miron , Abhinav Valada

We propose a new, generic and flexible methodology for nonparametric function estimation, in which we first estimate the number and locations of any features that may be present in the function, and then estimate the function parametrically…

Methodology · Statistics 2024-12-17 Rafal Baranowski , Yining Chen , Piotr Fryzlewicz

Image-text retrieval has developed rapidly in recent years. However, it is still a challenge in remote sensing due to visual-semantic imbalance, which leads to incorrect matching of non-semantic visual and textual features. To solve this…

Computer Vision and Pattern Recognition · Computer Science 2024-11-27 Qing Ma , Jiancheng Pan , Cong Bai

Recent developments in spatial omics technologies have enabled the generation of high dimensional molecular data, such as transcriptomes, proteomes, and epigenomes, within their spatial tissue context, either through coprofiling on the same…

Quantitative Methods · Quantitative Biology 2026-01-21 Esra Busra Isik , Yusuf Hakan Usta , Haozhe Liu , Maryam Riazi , William Roach , Hongpeng Zhou , Magnus Rattray , Sokratia Georgaka

Spatial transcriptomics (ST) technologies enable gene expression profiling with spatial resolution, offering unprecedented insights into tissue organization and disease heterogeneity. However, current analysis methods often struggle with…

Performance of convolutional neural networks (CNNs) in image analysis tasks is often marred in the presence of acquisition-related distribution shifts between training and test images. Recently, it has been proposed to tackle this problem…

Computer Vision and Pattern Recognition · Computer Science 2022-02-14 Neerav Karani , Georg Brunner , Ertunc Erdil , Simin Fei , Kerem Tezcan , Krishna Chaitanya , Ender Konukoglu