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Molecular representations fundamentally shape how machine learning systems reason about molecular structure and physical properties. Most existing approaches adopt a discrete pipeline: molecules are encoded as sequences, graphs, or point…

We present a neural semi-supervised learning model termed Self-Pretraining. Our model is inspired by the classic self-training algorithm. However, as opposed to self-training, Self-Pretraining is threshold-free, it can potentially update…

Computation and Language · Computer Science 2021-10-01 Payam Karisani , Negin Karisani

The search for new high-performance organic semiconducting molecules is challenging due to the vastness of the chemical space, machine learning methods, particularly deep learning models like graph neural networks (GNNs), have shown…

Chemical Physics · Physics 2021-12-06 Zaixi Zhang , Qi Liu , Shengyu Zhang , Chang-Yu Hsieh , Liang Shi , Chee-Kong Lee

Pretraining has been shown to improve performance in many domains, including semantic segmentation, especially in domains with limited labelled data. In this work, we perform a large-scale evaluation and benchmarking of various pretraining…

Computer Vision and Pattern Recognition · Computer Science 2024-02-28 David Torpey , Lawrence Pratt , Richard Klein

We introduce a foundation model for event classification in high-energy physics, built on a Graph Neural Network architecture and trained on 120 million simulated proton-proton collision events spanning 12 distinct physics processes. The…

High Energy Physics - Phenomenology · Physics 2026-05-08 Joshua Ho , Benjamin Ryan Roberts , Shuo Han , Haichen Wang

When training data is scarce, the incorporation of additional prior knowledge can assist the learning process. While it is common to initialize neural networks with weights that have been pre-trained on other large data sets, pre-training…

Machine Learning · Computer Science 2022-05-24 Laura von Rueden , Sebastian Houben , Kostadin Cvejoski , Christian Bauckhage , Nico Piatkowski

Deep neural networks demonstrated their ability to provide remarkable performances on a wide range of supervised learning tasks (e.g., image classification) when trained on extensive collections of labeled data (e.g., ImageNet). However,…

Machine Learning · Computer Science 2020-07-07 Yassine Ouali , Céline Hudelot , Myriam Tami

The significant achievements of pre-trained models leveraging large volumes of data in the field of NLP and 2D vision inspire us to explore the potential of extensive data pre-training for 3D perception in autonomous driving. Toward this…

Computer Vision and Pattern Recognition · Computer Science 2025-04-18 Shumin Wang , Zhuoran Yang , Lidian Wang , Zhipeng Tang , Heng Li , Lehan Pan , Sha Zhang , Jie Peng , Jianmin Ji , Yanyong Zhang

Self-supervised learning has transformed 2D computer vision by enabling models trained on large, unannotated datasets to provide versatile off-the-shelf features that perform similarly to models trained with labels. However, in 3D scene…

Computer Vision and Pattern Recognition · Computer Science 2025-04-10 Pedro Hermosilla , Christian Stippel , Leon Sick

Natural products, as metabolites from microorganisms, animals, or plants, exhibit diverse biological activities, making them crucial for drug discovery. Nowadays, existing deep learning methods for natural products research primarily rely…

Quantitative Methods · Quantitative Biology 2026-05-11 Yuheng Ding , Bo Qiang , Shaoning Li , Yiran Zhou , Jie Yu , Qi Li , Cheng Shi , Liangren Zhang , Yusong Wang , Nanning Zheng , Zhenming Liu

The rapid development of pretrained Machine Learning Interatomic Potentials (MLIPs) that cover a wide range of molecular species has made it challenging to select the best model for a given application. We benchmark 15 pretrained MLIPs,…

Chemical Physics · Physics 2026-04-22 Peter Eastman , Evan Pretti , Thomas E. Markland

The success of deep learning in computer vision is rooted in the ability of deep networks to scale up model complexity as demanded by challenging visual tasks. As complexity is increased, so is the need for large amounts of labeled data to…

Computer Vision and Pattern Recognition · Computer Science 2017-08-22 Gustav Larsson

In recent years, pre-trained graph neural networks (GNNs) have been developed as general models which can be effectively fine-tuned for various potential downstream tasks in materials science, and have shown significant improvements in…

Materials Science · Physics 2025-03-04 Shuyi Jia , Shitij Govil , Manav Ramprasad , Victor Fung

Quantum computing leverages quantum effects to build algorithms that are faster then their classical variants. In machine learning, for a given model architecture, the speed of training the model is typically determined by the size of the…

Machine Learning · Computer Science 2022-04-25 Seyran Saeedi , Aliakbar Panahi , Tom Arodz

Deep neural networks for aerial image segmentation require large amounts of labeled data, but high-quality aerial datasets with precise annotations are scarce and costly to produce. To address this limitation, we propose a self-supervised…

Computer Vision and Pattern Recognition · Computer Science 2025-04-02 Rupert Polley , Sai Vignesh Abishek Deenadayalan , J. Marius Zöllner

Artificial intelligence (AI) has been widely applied in drug discovery with a major task as molecular property prediction. Despite booming techniques in molecular representation learning, key elements underlying molecular property…

Quantitative Methods · Quantitative Biology 2023-09-06 Jianyuan Deng , Zhibo Yang , Hehe Wang , Iwao Ojima , Dimitris Samaras , Fusheng Wang

Self-supervised learning is an effective way for label-free model pre-training, especially in the video domain where labeling is expensive. Existing self-supervised works in the video domain use varying experimental setups to demonstrate…

Computer Vision and Pattern Recognition · Computer Science 2023-11-22 Akash Kumar , Ashlesha Kumar , Vibhav Vineet , Yogesh Singh Rawat

The training of molecular models of quantum mechanical properties based on statistical machine learning requires large datasets which exemplify the map from chemical structure to molecular property. Intelligent a priori selection of…

Large Language Models have received significant attention due to their abilities to solve a wide range of complex tasks. However these models memorize a significant proportion of their training data, posing a serious threat when disclosed…

Cryptography and Security · Computer Science 2025-07-16 Jérémie Dentan , Davide Buscaldi , Aymen Shabou , Sonia Vanier

Pre-trained models are nowadays a fundamental component of machine learning research. In continual learning, they are commonly used to initialize the model before training on the stream of non-stationary data. However, pre-training is…

Machine Learning · Computer Science 2022-05-20 Andrea Cossu , Tinne Tuytelaars , Antonio Carta , Lucia Passaro , Vincenzo Lomonaco , Davide Bacciu
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