English
Related papers

Related papers: Supervised Pretraining for Molecular Force Fields …

200 papers

In this work, we study different approaches to self-supervised pretraining of object detection models. We first design a general framework to learn a spatially consistent dense representation from an image, by randomly sampling and…

Computer Vision and Pattern Recognition · Computer Science 2022-08-12 Trung Dang , Simon Kornblith , Huy Thong Nguyen , Peter Chin , Maryam Khademi

In self-supervised learning, a model is trained to solve a pretext task, using a data set whose annotations are created by a machine. The objective is to transfer the trained weights to perform a downstream task in the target domain. We…

Machine Learning · Computer Science 2021-10-22 Prathamesh Sonawane , Sparsh Drolia , Saqib Shamsi , Bhargav Jain

One paradigm for learning from few labeled examples while making best use of a large amount of unlabeled data is unsupervised pretraining followed by supervised fine-tuning. Although this paradigm uses unlabeled data in a task-agnostic way,…

Machine Learning · Computer Science 2020-10-27 Ting Chen , Simon Kornblith , Kevin Swersky , Mohammad Norouzi , Geoffrey Hinton

Data-driven approaches such as deep learning can result in predictive models for material properties with exceptional accuracy and efficiency. However, in many applications, data is sparse, severely limiting their accuracy and…

Machine Learning · Computer Science 2025-10-29 Robert J Appleton , Brian C Barnes , Alejandro Strachan

Machine learning techniques paired with the availability of massive datasets dramatically enhance our ability to explore the chemical compound space by providing fast and accurate predictions of molecular properties. However, learning on…

Neural methods of molecule property prediction require efficient encoding of structure and property relationship to be accurate. Recent work using graph algorithms shows limited generalization in the latent molecule encoding space. We build…

Quantitative Methods · Quantitative Biology 2020-11-26 Prateeth Nayak , Andrew Silberfarb , Ran Chen , Tulay Muezzinoglu , John Byrnes

We apply a Transformer architecture, specifically BERT, to learn flexible and high quality molecular representations for drug discovery problems. We study the impact of using different combinations of self-supervised tasks for pre-training,…

Machine Learning · Computer Science 2020-11-30 Benedek Fabian , Thomas Edlich , Héléna Gaspar , Marwin Segler , Joshua Meyers , Marco Fiscato , Mohamed Ahmed

Learning representations of molecular structures using deep learning is a fundamental problem in molecular property prediction tasks. Molecules inherently exist in the real world as three-dimensional structures; furthermore, they are not…

Machine Learning · Computer Science 2024-01-22 Daiki Koge , Naoaki Ono , Shigehiko Kanaya

Neural network potentials (NNPs) are crucial for accelerating computational materials science by surrogating density functional theory (DFT) calculations. Improving their accuracy is possible through pre-training and fine-tuning, where an…

Machine Learning · Computer Science 2025-05-29 Yosuke Oyama , Yusuke Majima , Eiji Ohta , Yasufumi Sakai

Deep learning methods are notoriously data-hungry, which requires a large number of labeled samples. Unfortunately, the large amount of interactive sample labeling efforts has dramatically hindered the application of deep learning methods,…

Computer Vision and Pattern Recognition · Computer Science 2022-09-27 Han Hu , Xinrong Liang , Yulin Ding , Qisen Shang , Bo Xu , Xuming Ge , Min Chen , Ruofei Zhong , Qing Zhu

Training deep neural networks requires massive amounts of training data, but for many tasks only limited labeled data is available. This makes weak supervision attractive, using weak or noisy signals like the output of heuristic methods or…

Machine Learning · Computer Science 2017-12-08 Mostafa Dehghani , Aliaksei Severyn , Sascha Rothe , Jaap Kamps

Foundation models have recently gained attention within the field of machine learning thanks to its efficiency in broad data processing. While researchers had attempted to extend this success to time series models, the main challenge is…

Machine Learning · Computer Science 2023-11-22 Trang H. Tran , Lam M. Nguyen , Kyongmin Yeo , Nam Nguyen , Roman Vaculin

A key property of neural networks (both biological and artificial) is how they learn to represent and manipulate input information in order to solve a task. Different types of representations may be suited to different types of tasks,…

Machine Learning · Computer Science 2023-07-18 Ryan Pyle , Sebastian Musslick , Jonathan D. Cohen , Ankit B. Patel

Understanding protein sequences is vital and urgent for biology, healthcare, and medicine. Labeling approaches are expensive yet time-consuming, while the amount of unlabeled data is increasing quite faster than that of the labeled data due…

Computation and Language · Computer Science 2021-11-01 Liang He , Shizhuo Zhang , Lijun Wu , Huanhuan Xia , Fusong Ju , He Zhang , Siyuan Liu , Yingce Xia , Jianwei Zhu , Pan Deng , Bin Shao , Tao Qin , Tie-Yan Liu

Pretraining is a common technique in deep learning for increasing performance and reducing training time, with promising experimental results in deep reinforcement learning (RL). However, pretraining requires a relevant dataset for…

Machine Learning · Computer Science 2021-10-07 Saurav Kadavath , Samuel Paradis , Brian Yao

To address the computational challenges of ab initio molecular dynamics and the accuracy limitations of empirical force fields, the introduction of machine learning force fields has proven effective in various systems including metals and…

Soft Condensed Matter · Physics 2023-12-18 Junbao Hu , Liyang Zhou , Jian Jiang

Chemical representation learning has gained increasing interest due to the limited availability of supervised data in fields such as drug and materials design. This interest particularly extends to chemical language representation learning,…

Chemical Physics · Physics 2024-08-06 Jun-Hyung Park , Yeachan Kim , Mingyu Lee , Hyuntae Park , SangKeun Lee

Self-supervised pretraining has been observed to be effective at improving feature representations for transfer learning, leveraging large amounts of unlabelled data. This review summarizes recent research into its usage in X-ray, computed…

Machine Learning · Computer Science 2023-09-07 Blake VanBerlo , Jesse Hoey , Alexander Wong

In defense-related remote sensing applications, such as vehicle detection on satellite imagery, supervised learning requires a huge number of labeled examples to reach operational performances. Such data are challenging to obtain as it…

Computer Vision and Pattern Recognition · Computer Science 2024-10-08 Jules BOURCIER , Thomas Floquet , Gohar Dashyan , Tugdual Ceillier , Karteek Alahari , Jocelyn Chanussot

It has been observed \citep{zhang2016understanding} that deep neural networks can memorize: they achieve 100\% accuracy on training data. Recent theoretical results explained such behavior in highly overparametrized regimes, where the…

Machine Learning · Computer Science 2019-09-27 Rong Ge , Runzhe Wang , Haoyu Zhao
‹ Prev 1 3 4 5 6 7 10 Next ›