Related papers: Maximal Closed Substrings
We study the approximability of Max Ones when the number of variable occurrences is bounded by a constant. For conservative constraint languages (i.e., when the unary relations are included) we give a complete classification when the number…
Algorithm MLS (Maximal Label Search) is a graph search algorithm which generalizes algorithms MCS, LexBFS, LexDFS and MNS. On a chordal graph, MLS computes a peo (perfect elimination ordering) of the graph. We show how algorithm MLS can be…
Motivated by mass-spectrometry protein sequencing, we consider a simply-stated problem of reconstructing a string from the multiset of its substring compositions. We show that all strings of length 7, one less than a prime, or one less than…
A palindrome is a string that reads the same forward and backward. A palindromic substring $w$ of a string $T$ is called a minimal unique palindromic substring (MUPS) of $T$ if $w$ occurs only once in $T$ and any proper palindromic…
We introduce a data structure for counting pattern occurrences in texts compressed with any run-length context-free grammar. Our structure uses space proportional to the grammar size and counts the occurrences of a pattern of length $m$ in…
A code of length $n$ is said to be (combinatorially) $(\rho,L)$-list decodable if the Hamming ball of radius $\rho n$ around any vector in the ambient space does not contain more than $L$ codewords. We study a recently introduced class of…
A classical measure of string comparison is given by the longest common subsequence (LCS) problem on a pair of strings. We consider its generalisation, called the semi-local LCS problem, which arises naturally in many string-related…
Alspach [ Bull. Inst. Combin. Appl., 52 (2008), pp. 7-20] defined the maximal matching sequencibility of a graph $G$, denoted $ms(G)$, to be the largest integer $s$ for which there is an ordering of the edges of $G$ such that every $s$…
Compressed indexing is a powerful technique that enables efficient querying over data stored in compressed form, significantly reducing memory usage and often accelerating computation. While extensive progress has been made for…
The nature of the alignment with gaps corresponding to a longest common subsequence (LCS) of two independent iid random sequences drawn from a finite alphabet is investigated. It is shown that such an optimal alignment typically matches…
Two words have a reverse if they have the same pair of distinct letters on the same pair of positions, but in reversed order. A set of words no two of which have a reverse is said to be reverse-free. Let F(n,k) be the maximum size of a…
A word~$w$ has a border $u$ if $u$ is a non-empty proper prefix and suffix of $u$. A word~$w$ is said to be \emph{closed} if $w$ is of length at most $1$ or if $w$ has a border that occurs exactly twice in $w$. A word~$w$ is said to be…
Algorithms for convex feasibility find or approximate a point in the intersection of given closed convex sets. Typically there are only finitely many convex sets, but the case of infinitely many convex sets also has some applications. In…
In {\sc MaxSat}, we ask for an assignment which satisfies the maximum number of clauses for a boolean formula in CNF. We present an algorithm yielding a run time upper bound of $O^*(2^{\frac{1}{6.2158}})$ for {\sc Max-2-Sat} (each clause…
Traditional error-correcting codes (ECCs) assume a fixed message length, but many scenarios involve ongoing or indefinite transmissions where the message length is not known in advance. For example, when streaming a video, the user should…
The following problem is considered. A Turing machine $M$, that accepts a string of fixed length $t$ as input, runs for a time not exceeding a fixed value $n$ and is guaranteed to produce a binary output, is given. It's required to find a…
A perfect straight-line matching $M$ on a finite set $P$ of points in the plane is a set of segments such that each point in $P$ is an endpoint of exactly one segment. $M$ is non-crossing if no two segments in $M$ cross each other. Given a…
The minimum circuit size problem (MCSP) is a string compression problem with a parameter $s$ in which, given the truth table of a Boolean function over inputs of length $n$, one must answer whether it can be computed by a Boolean circuit of…
For a string $S$, a palindromic substring $S[i..j]$ is said to be a \emph{shortest unique palindromic substring} ($\mathit{SUPS}$) for an interval $[s, t]$ in $S$, if $S[i..j]$ occurs exactly once in $S$, the interval $[i, j]$ contains $[s,…
We study the optimization version of constraint satisfaction problems (Max-CSPs) in the framework of parameterized complexity; the goal is to compute the maximum fraction of constraints that can be satisfied simultaneously. In standard…