Related papers: Maximal Closed Substrings
The 2-LCPS problem, first introduced by Chowdhury et al. [Fundam. Inform., 129(4):329-340, 2014], asks one to compute (the length of) a longest palindromic common subsequence between two given strings $A$ and $B$. We show that the 2-LCPS…
A word is said to be \emph{bordered} if it contains a non-empty proper prefix that is also a suffix. We can naturally extend this definition to pairs of non-empty words. A pair of words $(u,v)$ is said to be \emph{mutually bordered} if…
The Maximum Betweenness Centrality problem (MBC) can be defined as follows. Given a graph find a $k$-element node set $C$ that maximizes the probability of detecting communication between a pair of nodes $s$ and $t$ chosen uniformly at…
An exponent-string is an extension of traditional strings that can incorporate real-numbered exponents, indicating the quantity of characters. This novel representation overcomes the limitations of traditional discrete string by enabling…
In this paper, we describe a new type of match between a pattern and a text that aren't necessarily maximal in the query, but still contain useful matching information: locally maximal exact matches (LEMs). There are usually a large amount…
Real-world data often comes in compressed form. Analyzing compressed data directly (without decompressing it) can save space and time by orders of magnitude. In this work, we focus on fundamental sequence comparison problems and try to…
A sequence $s(n)$ of integers is MC-finite if for every $m \in \mathbb{N}^+$ the sequence $s^m(n) = s(n) \bmod{m}$ is ultimately periodic. We discuss various ways of proving and disproving MC-finiteness. Our examples are mostly taken from…
We present an algorithm computing the longest periodic subsequence of a string of length $n$ in $O(n^7)$ time with $O(n^4)$ words of space. We obtain improvements when restricting the exponents or extending the search allowing the reported…
We describe the statistics of repetition times of a string of symbols in a stochastic process. Denote by T(A) the time elapsed until the process spells the finite string A and by S(A) the number of consecutive repetitions of A. We prove…
We study the problem of supporting queries on a string $S$ of length $n$ within a space bounded by the size $\gamma$ of a string attractor for $S$. Recent works showed that random access on $S$ can be supported in optimal…
A grounded 1-bend string graph is an intersection graph of a set of polygonal lines, each with one bend, such that the lines lie above a common horizontal line $\ell$ and have exactly one endpoint on $\ell$. We show that the problem of…
A repetition free Longest Common Subsequence (LCS) of two sequences x and y is an LCS of x and y where each symbol may appear at most once. Let R denote the length of a repetition free LCS of two sequences of n symbols each one chosen…
Computation on compressed strings is one of the key approaches to processing massive data sets. We consider local subsequence recognition problems on strings compressed by straight-line programs (SLP), which is closely related to…
Longest Run Subsequence is a problem introduced recently in the context of the scaffolding phase of genome assembly (Schrinner et al., WABI 2020). The problem asks for a maximum length subsequence of a given string that contains at most one…
We consider embeddings of maximal outerplanar graphs whose vertices all lie on a cycle $\mathcal{C}$ bounding a face. Each edge of the graph that is not in $\mathcal{C}$, a chord, is assigned a length equal to the length of the shortest…
The degree of a CSP instance is the maximum number of times that a variable may appear in the scope of constraints. We consider the approximate counting problem for Boolean CSPs with bounded-degree instances, for constraint languages…
Let $S_{T}(k)$ denote the set of distinct substrings of length $k$ in a string $T$, then the $k$-th substring complexity is defined by its cardinality $|S_{T}(k)|$. Recently, $\delta = \max \{ |S_{T}(k)| / k : k \ge 1 \}$ is shown to be a…
Consider the set of all sequences of $n$ outcomes, each taking one of $m$ values, that satisfy a number of linear constraints. If $m$ is fixed while $n$ increases, most sequences that satisfy the constraints result in frequency vectors…
Given the vast reservoirs of data stored worldwide, efficient mining of data from a large information store has emerged as a great challenge. Many databases like that of intrusion detection systems, web-click records, player statistics,…
Exact pattern matching in labeled graphs is the problem of searching paths of a graph $G=(V,E)$ that spell the same string as the pattern $P[1..m]$. This basic problem can be found at the heart of more complex operations on variation graphs…