Related papers: Maximal Closed Substrings
Grammar based compression, where one replaces a long string by a small context-free grammar that generates the string, is a simple and powerful paradigm that captures many popular compression schemes. In this paper, we present a novel…
Identifying regularities in strings, such as \emph{periods} and \emph{covers}, is crucial for applications in text compression, computational biology, and pattern recognition. \emph{Characters-Distance-Sampling} (\texttt{CDS}) is an…
We describe the first self-indexes able to count and locate pattern occurrences in optimal time within a space bounded by the size of the most popular dictionary compressors. To achieve this result we combine several recent findings,…
A multiset of literals, called a clause, is \emph{strongly satisfied} by an assignment if \emph{no} literal evaluates to false. Finding an assignment that maximises the number of strongly satisfied clauses is NP-hard. We present a simple…
The Longest Common Subsequence (LCS) Problem asks for the longest sequence of (non-contiguous) matches between two given strings of characters. Using extensive Monte Carlo simulations, we find a finite size scaling law of the form E(L)/N =C…
The circular dictionary matching problem is an extension of the classical dictionary matching problem where every string in the dictionary is interpreted as a circular string: after reading the last character of a string, we can move back…
We present a new data structure called the \emph{Compressed Random Access Memory} (CRAM) that can store a dynamic string $T$ of characters, e.g., representing the memory of a computer, in compressed form while achieving asymptotically…
We study the entanglement of closed strings degrees of freedom in order to investigate the microscopic structure and statistics of objects as D-branes. By considering the macroscopic pure state (MPS) limit, whenever the entanglement entropy…
In the Manhattan Sequence Consensus problem (MSC problem) we are given $k$ integer sequences, each of length $l$, and we are to find an integer sequence $x$ of length $l$ (called a consensus sequence), such that the maximum Manhattan…
We study the problem of finding maximal exact matches (MEMs) between a query string $Q$ and a labeled graph $G$. MEMs are an important class of seeds, often used in seed-chain-extend type of practical alignment methods because of their…
In this paper we characterize a mathematical model called Maximum Common Subelement (MCS) Model and prove the existence of four different metrics on such model. We generalize metrics on graphs previously proposed in the literature and…
We give a new characterization of maximal repetitions (or runs) in strings based on Lyndon words. The characterization leads to a proof of what was known as the "runs" conjecture (Kolpakov \& Kucherov (FOCS '99)), which states that the…
A q-ary linear code of dimension k is called a maximum weight spectrum (MWS) code if it has the maximum possible number (viz. (q^k-1)/(q-1)) of different non-zero weights. We construct MWS codes from quasi-minimal codes, thus obtaining of…
The main conjecture on maximum distance separable (MDS) codes states that, execpt for some special cases, the maximum length of a q-ary linear MDS code is q+1. This conjecture does not hold true for near maximum distance separable codes…
A \emph{square} is a finite non-empty word consisting of two identical adjacent blocks. A word is \emph{square-free} if it does not contain a square as a factor. In any finite word one may delete the repeated block of a square, obtaining…
This paper provides an upper bound for several subsets of maximal repeats and maximal pairs in compressed strings and also presents a formerly unknown relationship between maximal pairs and the run-length Burrows-Wheeler transform. This…
The {\em shortest common superstring} and the {\em shortest common supersequence} are two well studied problems having a wide range of applications. In this paper we consider both problems with resource constraints, denoted as the…
The first two authors have shown [KK99,KK00] that the sum the exponent (and thus the number) of maximal repetitions of exponent at least 2 (also called runs) is linear in the length of the word. The exponent 2 in the definition of a run may…
We consider the problem of finding, given two documents of total length $n$, a longest string occurring as a substring of both documents. This problem, known as the Longest Common Substring (LCS) problem, has a classic $O(n)$-time solution…
In the classical longest palindromic substring (LPS) problem, we are given a string $S$ of length $n$, and the task is to output a longest palindromic substring in $S$. Gilbert, Hajiaghayi, Saleh, and Seddighin [SPAA 2023] showed how to…