Related papers: Maximal Closed Substrings
A matrix $M$ over the finite field $ \mathbb{F}_q $ is called \emph{maximum distance separable} (MDS) if all of its square submatrices are non-singular. These MDS matrices are very important in cryptography and coding theory because they…
The random access problem for compressed strings is to build a data structure that efficiently supports accessing the character in position $i$ of a string given in compressed form. Given a grammar of size $n$ compressing a string of size…
In the longest common substring (LCS) problem, we are given two strings $S$ and $T$, each of length at most $n$, and we are asked to find a longest string occurring as a fragment of both $S$ and $T$. This is a classical and well-studied…
Given a string $S$ of length $n$, its maximal unbordered factor is the longest factor which does not have a border. In this work we investigate the relationship between $n$ and the length of the maximal unbordered factor of $S$. We prove…
The Average Common Substring (ACS) is a popular alignment-free distance measure for phylogeny reconstruction. The ACS can be computed in O(n) space and time, where n=x+y is the input size. The compressed string matching is the study of…
We consider the problem Minimum Error Correction (MEC). A MEC instance is an n x m matrix M with entries from {0,1,-}. Feasible solutions are composed of two binary m-bit strings, together with an assignment of each row of M to one of the…
We revisit various string indexing problems with range reporting features, namely, position-restricted substring searching, indexing substrings with gaps, and indexing substrings with intervals. We obtain the following main results.…
Given a set of $k$ strings $I$, their longest common subsequence (LCS) is the string with the maximum length that is a subset of all the strings in $I$. A data-structure for this problem preprocesses $I$ into a data-structure such that the…
A string is said to be closed if its length is one, or if it has a non-empty factor that occurs both as a prefix and as a suffix of the string, but does not occur elsewhere. The notion of closed words was introduced by [Fici, WORDS 2011].…
A closed word (a.k.a. periodic-like word or complete first return) is a word whose longest border does not have internal occurrences, or, equivalently, whose longest repeated prefix is not right special. We investigate the structure of…
In the longest common substring problem, we are given two strings of length $n$ and must find a substring of maximal length that occurs in both strings. It is well known that the problem can be solved in linear time, but the solution is not…
We introduce the natural notion of a matching frame in a $2$-dimensional string. A matching frame in a $2$-dimensional $n\times m$ string $M$, is a rectangle such that the strings written on the horizontal sides of the rectangle are…
Repeat finding in strings has important applications in subfields such as computational biology. The challenge of finding the longest repeats covering particular string positions was recently proposed and solved by \.{I}leri et al., using a…
We study a new generalization of palindromes and gapped palindromes called block palindromes. A block palindrome is a string that becomes a palindrome when identical substrings are replaced with a distinct character. We investigate several…
We demonstrate that the spectrum of any consistent string theory in $D$ dimensions must satisfy a number of supertrace constraints: $ Str~M^{2n}=0 $ for $0 \leq n < D/2-1$, integer $n$. These results hold for a large class of string…
For $0<\delta <1$ a $\delta$-subrepetition in a word is a factor which exponent is less than~2 but is not less than $1+\delta$ (the exponent of the factor is the ratio of the factor length to its minimal period). The $\delta$-subrepetition…
The determination of the maximal length of maximum distance separable (MDS) codes arising from elliptic curves is a central problem in coding theory. For an elliptic curve $E$ over $\mathbb{F}_q$, let $\operatorname{MEC}(k,q)$ denote the…
In the problem of the longest common substring with $k$ mismatches we are given two strings $X, Y$ and must find the maximal length $\ell$ such that there is a length-$\ell$ substring of $X$ and a length-$\ell$ substring of $Y$ that differ…
A substring $u$ of a string $T$ is called a minimal unique substring (MUS) of $T$ if $u$ occurs exactly once in $T$ and any proper substring of $u$ occurs at least twice in $T$. A string $w$ is called a minimal absent word (MAW) of $T$ if…
Finding maximal exact matches (MEMs) between strings is an important task in bioinformatics, but it is becoming increasingly challenging as geneticists switch to pangenomic references. Fortunately, we are usually interested only in the…