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A hydrated 1,2-dimyristoyl-sn-glycero-3-phosphorylcholine (DMPC) lipid membrane is investigated using an all atom molecular dynamics simulation at 308K to find out the physical sources of universal slow relaxation of hydration layers.…

Soft Condensed Matter · Physics 2018-08-14 Abhinav Srivastava , Smarajit Karmakar , Ananya Debnath

Hydrophobic polyelectrolytes (HPE) can solubilize bilayer membranes, form micelles or can reversibly aggregate as a function of pH. The transitions are often remarkably sharp. We show that these cooperative transitions occur by a…

Soft Condensed Matter · Physics 2023-02-01 James L. Martin Robinson , Willem. K Kegel

Shear localization occurs in various instances of material instability in solid mechanics and is typically associated with Hadamard-instability for an underlying model. While Hadamard instability indicates the catastrophic growth of…

Analysis of PDEs · Mathematics 2017-03-09 Theodoros Katsaounis , Julien Olivier , Athanasios E. Tzavaras

By means of extensive replica-exchange simulations of generic coarse-grained models for helical polymers, we systematically investigate the structural transitions into all possible helical phases for flexible and semiflexible elastic…

Biological Physics · Physics 2015-09-23 Matthew J. Williams , Michael Bachmann

Protein-protein binding enables orderly and lawful biological self-organization, and is therefore considered a miracle of nature. Protein-protein binding is steered by electrostatic forces, hydrogen bonding, van der Waals force, and…

Biomolecules · Quantitative Biology 2022-02-23 Lin Yang , Shuai Guo , Chengyu Hou , Chencheng Liao , Jiacheng Li , Liping Shi , Xiaoliang Ma , Shenda Jiang , Bing Zheng , Yi Fang , Lin Ye , Xiaodong He

In the absence of coalescence, coarsening of emulsions (and foams) is controlled by molecular diffusion of dispersed phase between droplets/bubbles. Studies of dilute emulsions have shown how the osmotic pressure of a trapped species within…

Soft Condensed Matter · Physics 2007-05-23 A. J. Webster , M. E. Cates

The aggregation of protein-stabilised emulsions leads to the formation of emulsion gels. These soft solids are classically envisioned as droplet-filled matrices. Here however, it is assumed that protein-coated sub-micron droplets contribute…

Soft Condensed Matter · Physics 2020-10-06 Marion Roullet , Paul S. Clegg , William J. Frith

The low-frequency collective vibrational modes in proteins as well as the protein-water interface have been suggested as dominant factors controlling the efficiency of biochemical reactions and biological energy transport. It is thus…

Biological Physics · Physics 2019-03-29 Ali Charkhesht , Chola K. Regmi , Katie R. Mitchell-Koch , Shengfeng Cheng , Nguyen Q. Vinh

Liquid-liquid phase separation (LLPS) is important to control a wide range of reactions from gene expression to protein degradation in a cell-sized space. To bring a better understanding of the compatibility of such phase-separated…

Soft Condensed Matter · Physics 2021-10-01 Shuzo Kato , David Garenne , Vincent Noireaux , Yusuke T. Maeda

The mechanisms for phase separation in highly concentrated emulsions when subjected to a thermal phase transition remain to be elucidated. Here, we create a hexagonally close-packed monodisperse emulsion in 2D and show that during a…

Soft Condensed Matter · Physics 2020-04-15 Samira Abedi , Chau-Chyun Chen , Siva A. Vanapalli

Active particles, including swimming microorganisms, autophoretic colloids and droplets, are known to self-organize into ordered structures at fluid-solid boundaries. The entrainment of particles in the attractive parts of their spontaneous…

Soft Condensed Matter · Physics 2018-07-04 Shashi Thutupalli , Delphine Geyer , Rajesh Singh , Ronojoy Adhikari , Howard Stone

Binary mixtures are known to phase separate via both nucleation and spinodal decomposition, depending on the initial composition and extent of the quench. Here we develop an energy landscape view of phase separation and non-ideality in…

Statistical Mechanics · Physics 2010-12-22 Sarmistha Sarkar , Biman Bagchi

A recent study has demonstrated that phase separation in binary liquid mixtures is arrested in the presence of elastic networks and can lead to a nearly uniformly-sized distribution of the dilute-phase droplets. At longer timescales, these…

Soft Condensed Matter · Physics 2020-10-28 Mrityunjay Kothari , Tal Cohen

The mixing of binary fluids by stirrers is a commonplace procedure in many industrial and natural settings, and mixing efficiency directly translates into more homogeneous final products, more enriched compounds, and often substantial…

Fluid Dynamics · Physics 2022-08-12 Maximilian F. Eggl , Peter J. Schmid

Cytoskeletal motor proteins are involved in major intracellular transport processes which are vital for maintaining appropriate cellular function. The motor exhibits distinct states of motility: active motion along filaments, and…

Biological Physics · Physics 2016-11-29 Anne E. Hafner , Ludger Santen , Heiko Rieger , M. Reza Shaebani

A highly diluted aqueous solution of histamine was studied by molecular dynamics using the TIP3P and SPC/E water models. It was shown that the local structure of the solution around histamine is determined by local Coulomb interactions and…

Biomolecules · Quantitative Biology 2026-01-09 Dmytro A. Gavryushenko , N. Atamas , Oleg K. Myronenko

It is well known that collisionless systems are dissipation free from the perspective of particle collision and thus conserve entropy. On the other hand, processes such as magnetic reconnection and turbulence appear to convert large-scale…

Plasma Physics · Physics 2020-04-01 Senbei Du , Gary P. Zank , Fan Guo , Xiaocan Li

Understanding the mechanisms of hydrogen embrittlement (HE) is essential for advancing next-generation high-strength steels, thereby motivating the development of highly accurate machine-learning interatomic potentials (MLIPs) for the Fe-H…

Materials Science · Physics 2025-12-30 Kazuma Ito

Fluid membranes made out of lipid bilayers are the fundamental separation structure in eukaryotic cells. Many physiological processes rely on dramatic shape and topological changes (e.g. fusion, fission) of fluid membrane systems. Fluidity…

Numerical Analysis · Mathematics 2010-07-29 Marino Arroyo , Antonio DeSimone , Luca Heltai

Demixing of binary liquids is a ubiquitous transition, which is explained using a well-established thermodynamic formalism that requires equality of intensive thermodynamics parameters across the phase boundaries. Demixing transitions also…

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