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Biomedical documents such as Electronic Health Records (EHRs) contain a large amount of information in an unstructured format. The data in EHRs is a hugely valuable resource documenting clinical narratives and decisions, but whilst the text…

Computation and Language · Computer Science 2019-12-24 Zeljko Kraljevic , Daniel Bean , Aurelie Mascio , Lukasz Roguski , Amos Folarin , Angus Roberts , Rebecca Bendayan , Richard Dobson

Research in life sciences is increasingly being conducted in a digital and online environment. In particular, life scientists have been pioneers in embracing new computational tools to conduct their investigations. To support the sharing of…

As todays world grows with the technology on the other hand it seems to be small with the World Wide Web. With the use of Internet more and more information can be search from the web. When Users fires a query they want relevancy in…

Information Retrieval · Computer Science 2013-11-26 Debajyoti Mukhopadhyay , Sajeeda Shikalgar

Repositories of images with semantic and emotion content descriptions are valuable tools in many areas such as Affective Computing and Human-Computer Interaction, but they are also important in the development of multimodal searchable…

Information Retrieval · Computer Science 2017-12-06 Marko Horvat , Anton Grbin , Gordan Gledec

Causal relation extraction of biomedical entities is one of the most complex tasks in biomedical text mining, which involves two kinds of information: entity relations and entity functions. One feasible approach is to take relation…

Computation and Language · Computer Science 2022-08-03 Dongling Li , Pengchao Wu , Yuehu Dong , Jinghang Gu , Longhua Qian , Guodong Zhou

The increasing availability of biological data is improving our understanding of diseases and providing new insight into their underlying relationships. Thanks to the improvements on both text mining techniques and computational capacity,…

Understanding large, structured documents like scholarly articles, requests for proposals or business reports is a complex and difficult task. It involves discovering a document's overall purpose and subject(s), understanding the function…

Computation and Language · Computer Science 2018-07-27 Muhammad Mahbubur Rahman , Tim Finin

Entity linking is an important step towards constructing knowledge graphs that facilitate advanced question answering over scientific documents, including the retrieval of relevant information included in tables within these documents. This…

Information Retrieval · Computer Science 2023-06-21 Varish Mulwad , Tim Finin , Vijay S. Kumar , Jenny Weisenberg Williams , Sharad Dixit , Anupam Joshi

The purpose of this work is to find out how different library classification systems and linguistic ontologies arrange a particular domain of interest and what are the limitations for information retrieval. We use knowledge representation…

Artificial Intelligence · Computer Science 2023-06-21 Subhashis Das , Debashis Naskar , Sayon Roy

Over the past decade, there has been a steep rise in the data-driven analysis in major areas of medicine, such as clinical decision support system, survival analysis, patient similarity analysis, image analytics etc. Most of the data in the…

Information Retrieval · Computer Science 2020-10-06 Sheikh Shams Azam , Manoj Raju , Venkatesh Pagidimarri , Vamsi Kasivajjala

Although the goal of achieving semantic interoperability of electronic health records (EHRs) is pursued by many researchers, it has not been accomplished yet. In this paper, we present a proposal that smoothes out the way toward the…

Artificial Intelligence · Computer Science 2024-01-23 Idoia Berges , Jesús Bermúdez , Arantza Illarramendi

Machine Learning (ML) systems are capable of reproducing and often amplifying undesired biases. This puts emphasis on the importance of operating under practices that enable the study and understanding of the intrinsic characteristics of ML…

Artificial Intelligence · Computer Science 2025-12-01 Mayra Russo , Maria-Esther Vidal

Electronic Health Records maintained in health care settings are a potential source of substantial clinical knowledge. The massive volume of data, unstructured nature of records and obligatory requirement of domain acquaintance together…

Information Retrieval · Computer Science 2015-10-13 Gargi Priyadarshini , Ashish Anand

Most application development happens in the context of complex APIs; reference documentation for APIs has grown tremendously in variety, complexity, and volume, and can be difficult to navigate. There is a growing need to develop…

Software Engineering · Computer Science 2016-07-27 Niraj Kumar , Premkumar Devanbu

Epistemic AI accelerates biomedical discovery by finding hidden connections in the network of biomedical knowledge. The Epistemic AI web-based software platform embodies the concept of knowledge mapping, an interactive process that relies…

Artificial Intelligence · Computer Science 2022-04-04 Da Chen Emily Koo , Heather Bowling , Kenneth Ashworth , David J. Heeger , Stefano Pacifico

The extraction and analysis of insights from medical data, primarily stored in free-text formats by healthcare workers, presents significant challenges due to its unstructured nature. Medical coding, a crucial process in healthcare, remains…

Computation and Language · Computer Science 2024-05-28 Mikhail Kulyabin , Gleb Sokolov , Aleksandr Galaida , Andreas Maier , Tomas Arias-Vergara

Biomedical networks (or graphs) are universal descriptors for systems of interacting elements, from molecular interactions and disease co-morbidity to healthcare systems and scientific knowledge. Advances in artificial intelligence,…

Machine Learning · Computer Science 2025-02-07 Michelle M. Li , Kexin Huang , Marinka Zitnik

Document-Level Biomedical Relation Extraction (Bio-RE) aims to identify relations between biomedical entities within extensive texts, serving as a crucial subfield of biomedical text mining. Existing Bio-RE methods struggle with…

Computation and Language · Computer Science 2025-01-10 Yufei Shang , Yanrong Guo , Shijie Hao , Richang Hong

Methods for the automatic composition of services into executable workflows need detailed knowledge about the application domain,in particular about the available services and their behavior in terms of input/output data descriptions. In…

Software Engineering · Computer Science 2015-03-17 Anna-Lena Lamprecht , Stefan Naujokat , Bernhard Steffen , Tiziana Margaria

The community of different types of microbes present in a biological niche plays a very important role in functioning of the system. The crosstalk or interactions among the different microbes contributes to the building blocks of such…

Information Retrieval · Computer Science 2023-05-15 Krishanu Das Baksi , Vatsala Pokhrel , Kuntal Kumar Bhusan , Sharmila Mande