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In the research, we developed a computer vision solution to support diagnostic radiology in differentiating between COVID-19 pneumonia, influenza virus pneumonia, and normal biomarkers. The chest radiograph appearance of COVID-19 pneumonia…

Image and Video Processing · Electrical Eng. & Systems 2021-12-15 Julianna Antonchuk , Benjamin Prescott , Philip Melanchthon , Robin Singh

Influenza remains a significant burden on health systems. Effective responses rely on the timely understanding of the magnitude and the evolution of an outbreak. For monitoring purposes, data on severe cases of influenza in England are…

Recent studies have shown strong correlation between social networking data and national influenza rates. We expanded upon this success to develop an automated text mining system that classifies Twitter messages in real time into six…

Computation and Language · Computer Science 2011-10-17 Nigel Collier , Son Doan

Language models have advanced sequence analysis, yet DNA foundation models often lag behind task-specific methods for unclear reasons. We present AntigenLM, a generative DNA language model pretrained on influenza genomes with intact,…

Genomics · Quantitative Biology 2026-02-12 Yue Pei , Xuebin Chi , Yu Kang

Many biological processes are governed by protein-ligand interactions. One such example is the recognition of self and nonself cells by the immune system. This immune response process is regulated by the major histocompatibility complex…

Quantitative Methods · Quantitative Biology 2017-04-14 Yeeleng Scott Vang , Xiaohui Xie

We applied machine learning to the unmet medical need of rapid and accurate diagnosis and prognosis of acute infections and sepsis in emergency departments. Our solution consists of a Myrna (TM) Instrument and embedded TriVerity (TM)…

Over the last ten years, the US Centers for Disease Control and Prevention (CDC) has organized an annual influenza forecasting challenge with the motivation that accurate probabilistic forecasts could improve situational awareness and yield…

Machine Learning · Statistics 2024-07-30 Evan L. Ray , Yijin Wang , Russell D. Wolfinger , Nicholas G. Reich

Protein gamma-turn prediction is useful in protein function studies and experimental design. Several methods for gamma-turn prediction have been developed, but the results were unsatisfactory with Matthew correlation coefficients (MCC)…

Quantitative Methods · Quantitative Biology 2018-06-20 Chao Fang , Yi Shang , Dong Xu

Conventional surveillance systems for monitoring infectious diseases, such as influenza, face challenges due to shortage of skilled healthcare professionals, remoteness of communities and absence of communication infrastructures.…

Machine Learning · Computer Science 2018-11-28 Oguzhan Gencoglu , Miikka Ermes

Artificial intelligence (AI) is a powerful tool for reshaping healthcare systems. In healthcare, AI is invaluable for its capacity to manage vast amounts of data, which can lead to more accurate and speedy diagnoses, ultimately easing the…

Machine Learning · Computer Science 2023-12-06 Jai Pal , Bryan Hong

A central mechanism in machine learning is to identify, store, and recognize patterns. How to learn, access, and retrieve such patterns is crucial in Hopfield networks and the more recent transformer architectures. We show that the…

This paper proposes a weakly-supervised machine learning-based approach aiming at a tool to alert patients about possible respiratory diseases. Various types of pathologies may affect the respiratory system, potentially leading to severe…

Sound · Computer Science 2023-12-05 Michele Cozzatti , Federico Simonetta , Stavros Ntalampiras

The evolutionary dynamics of human Influenza A virus presents a challenging theoretical problem. An extremely high mutation rate allows the virus to escape, at each epidemic season, the host immune protection elicited by previous…

Populations and Evolution · Quantitative Biology 2016-11-30 Lorenzo Taggi , Francesca Colaiori , Vittorio Loreto , Francesca Tria

The influenza pandemic of 1918-1919 killed at least 50 million people. The reasons why this pandemic was so deadly remain largely unknown. However, It has been shown that the 1918 viral hemagglutinin allows to reproduce the hallmarks of the…

Biomolecules · Quantitative Biology 2017-06-28 Yves-Henri Sanejouand

This study presents a novel approach at the intersection of genomic analysis and artificial intelligence (AI) to predict viral mutations and assess the risks of future pandemics. Through comprehensive genomic analysis, genetic markers…

Other Quantitative Biology · Quantitative Biology 2023-09-29 Fadhil G. Al-Amran , Abbas M. Hezam , Salman Rawaf , Maitham G. Yousif

The advent of the coronavirus pandemic has sparked the interest in predictive models capable of forecasting virus-spreading, especially for boosting and supporting decision-making processes. In this paper, we will outline the main Deep…

Accurate and reliable predictions of infectious disease dynamics can be valuable to public health organizations that plan interventions to decrease or prevent disease transmission. A great variety of models have been developed for this…

Machine Learning · Statistics 2018-07-04 Evan L. Ray , Nicholas G. Reich

Respiratory diseases impose a significant burden on global health, with current diagnostic and management practices primarily reliant on specialist clinical testing. This work aims to develop machine learning-based algorithms to facilitate…

Machine Learning · Computer Science 2024-09-06 Negar Orangi-Fard , Alexandru Bogdan , Hersh Sagreiya

Infectious disease forecasts can reduce mortality and morbidity by supporting evidence-based public health decision making. Most epidemic models train on surveillance and structured data (e.g. weather, mobility, media), missing contextual…

This paper introduces a novel approach for dengue fever classification based on online learning paradigms. The proposed approach is suitable for practical implementation as it enables learning using only a few training samples. With time,…

Machine Learning · Computer Science 2019-04-18 Siddharth Srivastava , Sumit Soman , Astha Rai
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