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Ensuring the FAIRness (Findable, Accessible, Interoperable, Reusable) of data and metadata is an important goal in both research and industry. Knowledge graphs and ontologies have been central in achieving this goal, with interoperability…

Databases · Computer Science 2025-12-23 Lars Vogt

We report on the process of taking an early 2000's mathematical library, the Small Phylogenetic Trees, and transforming it into a FAIR, modern, and sustainable repository for data from algebraic phylogenetics. This process is based on a…

History and Overview · Mathematics 2025-11-10 Tabea Bacher , Marina Garrote-López , Christiane Görgen , Marius J. Neubert

Recommender systems are effective tools for mitigating information overload and have seen extensive applications across various domains. However, the single focus on utility goals proves to be inadequate in addressing real-world concerns,…

Information Retrieval · Computer Science 2024-03-05 Yuying Zhao , Yu Wang , Yunchao Liu , Xueqi Cheng , Charu Aggarwal , Tyler Derr

In the AI-for-science era, scientific computing scenarios such as concurrent learning and high-throughput computing demand a new generation of infrastructure that supports scalable computing resources and automated workflow management on…

Data management can be a complex challenge in fields such as bioinformatics and health sciences, which continuously generate extensive heterogeneous datasets. In the context of collaborative global health initiatives, secure storage and…

Software Engineering · Computer Science 2026-05-20 Danilo Silva , Monika Moir , Cheryl Baxter , Tulio de Oliveira , Joicymara Xavier , Marcel Dunaiski

With recent increasing computational and data requirements of scientific applications, the use of large clustered systems as well as distributed resources is inevitable. Although executing large applications in these environments brings…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-06-30 Alexandru Costan , Florin Pop , Corina Stratan , Ciprian Dobre , Catalin Leordeanu , Valentin Cristea

Modeling-Simulation-Optimization workflows play a fundamental role in applied mathematics. The Mathematical Research Data Initiative, MaRDI, responded to this by developing a FAIR and machine-interpretable template for a comprehensive…

Artificial Intelligence · Computer Science 2024-08-01 Marco Reidelbach , Björn Schembera , Marcus Weber

The FAIR Principles aim to make data and knowledge Findable, Accessible, Interoperable, and Reusable, yet current digital infrastructures often lack a unifying semantic framework that bridges human cognition and machine-actionability. In…

Databases · Computer Science 2025-10-01 Lars Vogt , Barend Mons

Cloud platforms allow users to execute tasks directly from their web browser and are a key enabling technology not only for commerce but also for computational science. Research software is often developed by scientists with limited…

The landscape of workflow systems for scientific applications is notoriously convoluted with hundreds of seemingly equivalent workflow systems, many isolated research claims, and a steep learning curve. To address some of these challenges…

nanoHUB is an open cyber platform for online simulation, data, and education that seeks to make scientific software and associated data widely available and useful. This paper describes recent developments in our simulation infrastructure…

Recent developments in Artificial Intelligence techniques have enabled their successful application across a spectrum of commercial and industrial settings. However, these techniques require large volumes of data to be aggregated in a…

Cryptography and Security · Computer Science 2023-04-04 Dengsheng Chen , Vince Tan , Zhilin Lu , Jie Hu

Workflow technology is widely used to facilitate the business process in enterprise information systems (EIS), and it has the potential to reduce design time, enhance product quality and decrease product cost. However, significant…

Software Engineering · Computer Science 2012-09-19 Tingyu Liu , Yalong Cheng , Zhonghua Ni

With the increased interest in computational sciences, machine learning (ML), pattern recognition (PR) and big data, governmental agencies, academia and manufacturers are overwhelmed by the constant influx of new algorithms and techniques…

Software Engineering · Computer Science 2017-07-28 André Anjos , Laurent El-Shafey , Sébastien Marcel

As society becomes increasingly reliant on artificial intelligence, the need to mitigate risk and harm is paramount. In response, researchers and practitioners have developed tools to detect and reduce undesired bias, commonly referred to…

Software Engineering · Computer Science 2025-05-16 Sadia Afrin Mim , Fatemeh Vares , Andrew Meenly , Brittany Johnson

Experimental materials science is experiencing significant growth due to automated experimentation and AI techniques. Integrated autonomous platforms are emerging, combining generative models, robotics, simulations, and automated systems…

Software Engineering · Computer Science 2024-05-31 Amarnath Gupta , Shweta Purawat , Subhasis Dasgupta , Pratyush Karmakar , Elaine Chi , Ilkay Altintas

We discuss important aspects of HCI research regarding Research Data Management (RDM) to achieve better publication processes and higher reuse of HCI research results. Various context elements of RDM for HCI are discussed, including…

Human-Computer Interaction · Computer Science 2025-02-03 David Goedicke , Mark Colley , Sebastian S. Feger , Michael Goedicke , Bastian Pfleging , Wendy Ju

Nowadays, many scientific areas share the same broad requirements of being able to deal with massive and distributed datasets while, when possible, being integrated with services and applications. In order to solve the growing gap between…

Instrumentation and Methods for Astrophysics · Physics 2011-12-06 M. Brescia , S. Cavuoti , R. D'Abrusco , O. Laurino , G. Longo

Open Science, Reproducible Research, Findable, Accessible, Interoperable and Reusable (FAIR) data principles are long term goals for scientific dissemination. However, the implementation of these principles calls for a reinspection of our…

Digital Libraries · Computer Science 2021-03-11 Cristel Chandre , Jonathan Dubois