Making mathematical online resources FAIR: at the example of small phylogenetic trees
Abstract
We report on the process of taking an early 2000's mathematical library, the Small Phylogenetic Trees, and transforming it into a FAIR, modern, and sustainable repository for data from algebraic phylogenetics. This process is based on a three-fold strategy: (1) writing a software package which enables the user to reproduce results of the database; (2) setting up a user-friendly new website with cross links to theoretical publications, code snippets, and serialized output of computations; and (3) all-the-while documenting the steps we take in order to derive lessons learned which may be generalised to other such projects. This paper addresses (3). (1) is found in https://docs.oscar-system.org/dev/Experimental/AlgebraicStatistics/phylogenetics, and (2) is located at https://algebraicphylogenetics.org.
Keywords
Cite
@article{arxiv.2501.10823,
title = {Making mathematical online resources FAIR: at the example of small phylogenetic trees},
author = {Tabea Bacher and Marina Garrote-López and Christiane Görgen and Marius J. Neubert},
journal= {arXiv preprint arXiv:2501.10823},
year = {2025}
}
Comments
13 pages, 4 figures, Version 0.2 of https://algebraicphylogenetics.org has been launched