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Clustering is a fundamental tool that has garnered significant interest across a wide range of applications including text analysis. To improve clustering accuracy, many researchers have incorporated background knowledge, typically in the…

Machine Learning · Computer Science 2026-01-19 Chaoqi Jia , Weihong Wu , Longkun Guo , Zhigang Lu , Chao Chen , Kok-Leong Ong

Unlike traditional unsupervised clustering, semi-supervised clustering allows users to provide meaningful structure to the data, which helps the clustering algorithm to match the user's intent. Existing approaches to semi-supervised…

Computation and Language · Computer Science 2023-07-04 Vijay Viswanathan , Kiril Gashteovski , Carolin Lawrence , Tongshuang Wu , Graham Neubig

Considering that words with different characteristic in the text have different importance for classification, grouping them together separately can strengthen the semantic expression of each part. Thus we propose a new text representation…

Computation and Language · Computer Science 2019-06-19 Xiaoye Tan , Rui Yan , Chongyang Tao , Mingrui Wu

Pretrained language models (PLMs) form the basis of most state-of-the-art NLP technologies. Nevertheless, they are essentially black boxes: Humans do not have a clear understanding of what knowledge is encoded in different parts of the…

Computation and Language · Computer Science 2023-11-15 Tanja Baeumel , Soniya Vijayakumar , Josef van Genabith , Guenter Neumann , Simon Ostermann

This paper focuses on the problem of unsupervised relation extraction. Existing probabilistic generative model-based relation extraction methods work by extracting sentence features and using these features as inputs to train a generative…

Computation and Language · Computer Science 2020-09-29 Chenhan Yuan , Ryan Rossi , Andrew Katz , Hoda Eldardiry

There are already many DNA large language models, but most of them still follow traditional uses, such as extracting sequence features for classification tasks. More innovative applications of large language models, such as prompt…

Genomics · Quantitative Biology 2024-10-29 Wang Liang

With rapidly increasing data, clustering algorithms are important tools for data analytics in modern research. They have been successfully applied to a wide range of domains; for instance, bioinformatics, speech recognition, and financial…

Data Structures and Algorithms · Computer Science 2015-12-01 Ka-Chun Wong

The unsupervised text clustering is one of the major tasks in natural language processing (NLP) and remains a difficult and complex problem. Conventional \mbox{methods} generally treat this task using separated steps, including text…

Computation and Language · Computer Science 2019-03-25 Jie Zhou , Xingyi Cheng , Jinchao Zhang

Clustering analysis is one of the most widely used statistical tools in many emerging areas such as microarray data analysis. For microarray and other high-dimensional data, the presence of many noise variables may mask underlying…

Machine Learning · Statistics 2008-03-26 Benhuai Xie , Wei Pan , Xiaotong Shen

Clustering algorithms are pivotal in data analysis, enabling the organization of data into meaningful groups. However, individual clustering methods often exhibit inherent limitations and biases, preventing the development of a universal…

Neural and Evolutionary Computing · Computer Science 2024-12-13 H. Jahani , F. Zamio

Pre-trained language models (PLM), for example BERT or RoBERTa, mark the state-of-the-art for natural language understanding task when fine-tuned on labeled data. However, their large size poses challenges in deploying them for inference in…

Machine Learning · Computer Science 2024-08-27 Aaron Klein , Jacek Golebiowski , Xingchen Ma , Valerio Perrone , Cedric Archambeau

Purpose: This study aimed to enhance protein sequence classification using natural language processing (NLP) techniques while addressing the impact of sequence similarity on model performance. We compared various machine learning and deep…

Quantitative Methods · Quantitative Biology 2025-05-26 Huma Perveen , Julie Weeds

Statistical language models frequently suffer from a lack of training data. This problem can be alleviated by clustering, because it reduces the number of free parameters that need to be trained. However, clustered models have the following…

cmp-lg · Computer Science 2008-02-03 Joerg P. Ueberla

Language models, especially transformer-based ones, have achieved colossal success in NLP. To be precise, studies like BERT for NLU and works like GPT-3 for NLG are very important. If we consider DNA sequences as a text written with an…

Genomics · Quantitative Biology 2026-01-21 Musa Nuri Ihtiyar , Arzucan Ozgur

Microarrays are made it possible to simultaneously monitor the expression profiles of thousands of genes under various experimental conditions. Identification of co-expressed genes and coherent patterns is the central goal in microarray or…

Computational Engineering, Finance, and Science · Computer Science 2013-07-15 T. Chandrasekhar , K. Thangavel , E. Elayaraja , E. N. Sathishkumar

Many tasks in Natural Language Processing involve recognizing lexical entailment. Two different approaches to this problem have been proposed recently that are quite different from each other. The first is an asymmetric similarity measure…

Computation and Language · Computer Science 2014-12-03 John Wieting

Subspace clustering algorithms are used for understanding the cluster structure that explains the dataset well. These methods are extensively used for data-exploration tasks in various areas of Natural Sciences. However, most of these…

Machine Learning · Computer Science 2022-11-15 Ashutosh Singh , Ashish Singh , Aria Masoomi , Tales Imbiriba , Erik Learned-Miller , Deniz Erdogmus

Cluster analysis of biological samples using gene expression measurements is a common task which aids the discovery of heterogeneous biological sub-populations having distinct mRNA profiles. Several model-based clustering algorithms have…

Methodology · Statistics 2012-01-30 Alberto Cozzini , Ajay Jasra , Giovanni Montana

Text clustering serves as a fundamental technique for organizing and interpreting unstructured textual data, particularly in contexts where manual annotation is prohibitively costly. With the rapid advancement of Large Language Models…

Computation and Language · Computer Science 2025-10-08 Chen Huang , Guoxiu He

Now a days, the text document is spontaneously increasing over the internet, e-mail and web pages and they are stored in the electronic database format. To arrange and browse the document it becomes difficult. To overcome such problem the…

Computation and Language · Computer Science 2013-03-05 Leena H. Patil , Mohammed Atique