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This report explores the application of machine learning techniques on short timeseries gene expression data. Although standard machine learning algorithms work well on longer time-series', they often fail to find meaningful insights from…

Genomics · Quantitative Biology 2021-11-17 Akankshita Dash

With ongoing developments and innovations in single-cell RNA sequencing methods, advancements in sequencing performance could empower significant discoveries as well as new emerging possibilities to address biological and medical…

Applications · Statistics 2019-12-19 Jiawei Long , Yu Xia

We show that protein sequences can be thought of as sentences in natural language processing and can be parsed using the existing Quantum Natural Language framework into parameterized quantum circuits of reasonable qubits, which can be…

Clustering algorithms have wide applications and play an important role in data analysis fields including time series data analysis. However, in time series analysis, most of the algorithms used signal shape features or the initial value of…

Machine Learning · Statistics 2020-04-30 Daisuke Kaji , Kazuho Watanabe , Masahiro Kobayashi

In neural machine translation (NMT), it is has become standard to translate using subword units to allow for an open vocabulary and improve accuracy on infrequent words. Byte-pair encoding (BPE) and its variants are the predominant approach…

Computation and Language · Computer Science 2018-10-23 Elizabeth Salesky , Andrew Runge , Alex Coda , Jan Niehues , Graham Neubig

Many works proposed methods to improve the performance of Neural Machine Translation (NMT) models in a domain/multi-domain adaptation scenario. However, an understanding of how NMT baselines represent text domain information internally is…

Computation and Language · Computer Science 2021-09-17 Maksym Del , Elizaveta Korotkova , Mark Fishel

Due to increased access to clinical trial outcomes and analysis, researchers and scientists are able to iterate or improve upon relevant approaches more effectively. However, the metrics and related results of clinical trials typically do…

Computation and Language · Computer Science 2021-01-12 Shwetha Bharadwaj , Melanie Laffin

Traditional clustering methods are limited when dealing with huge and heterogeneous groups of gene expression data, which motivates the development of bi-clustering methods. Bi-clustering methods are used to mine bi-clusters whose subsets…

Computer Vision and Pattern Recognition · Computer Science 2020-05-13 Kaijie Xu , Witold Pedrycz , Zhiwu Li , Yinghui Quan , Weike Nie

Trace clustering has been extensively used to preprocess event logs. By grouping similar behavior, these techniques guide the identification of sub-logs, producing more understandable models and conformance analytics. Nevertheless, little…

Machine Learning · Computer Science 2021-09-03 Sylvio Barbon , Paolo Ceravolo , Ernesto Damiani , Gabriel Marques Tavares

Clustering short text is a difficult problem, due to the low word co-occurrence between short text documents. This work shows that large language models (LLMs) can overcome the limitations of traditional clustering approaches by generating…

Computation and Language · Computer Science 2025-04-08 Justin K. Miller , Tristram J. Alexander

In this paper, we address the problem of identifying protein functionality using the information contained in its aminoacid sequence. We propose a method to define sequence similarity relationships that can be used as input for…

Applications · Statistics 2007-11-12 A. G. Flesia , R. Fraiman , F. G. Leonardi

The task of Named Entity Recognition (NER) is an important component of many natural language processing systems, such as relation extraction and knowledge graph construction. In this work, we present a simple and effective approach for…

Computation and Language · Computer Science 2022-03-29 Urchade Zaratiana , Pierre Holat , Nadi Tomeh , Thierry Charnois

Convolutional neural networks are modern models that are very efficient in many classification tasks. They were originally created for image processing purposes. Then some trials were performed to use them in different domains like natural…

Computation and Language · Computer Science 2018-05-29 Krzysztof Wróbel , Marcin Pietroń , Maciej Wielgosz , Michał Karwatowski , Kazimierz Wiatr

This paper investigates the application of natural language processing (NLP)-based n-gram analysis and machine learning techniques to enhance malware classification. We explore how NLP can be used to extract and analyze textual features…

Cryptography and Security · Computer Science 2026-02-24 Bishwajit Prasad Gond , Rajneekant , Pushkar Kishore , Durga Prasad Mohapatra

We present a method that uses a Bloom filter transform to preprocess data for machine learning. Each sample is encoded into a compact bit-array representation using hash-based encoding, producing a fixed-length feature space that reduces…

Machine Learning · Computer Science 2026-05-11 John Cartmell , Mihaela Cardei , Ionut Cardei

In this paper, we propose a regularized mixture probabilistic model to cluster matrix data and apply it to brain signals. The approach is able to capture the sparsity (low rank, small/zero values) of the original signals by introducing…

Methodology · Statistics 2018-08-07 Xu Gao , Weining Shen , Hernando Ombao

Text Clustering is a text mining technique which divides the given set of text documents into significant clusters. It is used for organizing a huge number of text documents into a well-organized form. In the majority of the clustering…

Information Retrieval · Computer Science 2015-03-12 G. Hannah Grace , Kalyani Desikan

We study supervised learning problems using clustering constraints to impose structure on either features or samples, seeking to help both prediction and interpretation. The problem of clustering features arises naturally in text…

Machine Learning · Computer Science 2016-09-20 Vincent Roulet , Fajwel Fogel , Alexandre d'Aspremont , Francis Bach

Quantization, knowledge distillation, and magnitude pruning are among the most popular methods for neural network compression in NLP. Independently, these methods reduce model size and can accelerate inference, but their relative benefit…

Computation and Language · Computer Science 2022-08-23 Rajiv Movva , Jinhao Lei , Shayne Longpre , Ajay Gupta , Chris DuBois

On a wide range of natural language processing and information retrieval tasks, transformer-based models, particularly pre-trained language models like BERT, have demonstrated tremendous effectiveness. Due to the quadratic complexity of the…

Information Retrieval · Computer Science 2022-10-18 Minghan Li , Diana Nicoleta Popa , Johan Chagnon , Yagmur Gizem Cinar , Eric Gaussier
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