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The soybean aphid, Aphis glycines (Hemiptera: Aphididae), is an invasive pest that can cause severe yield loss to soybeans in the northcentral United States. A tactic to counter this pest is the use of aphid-resistant soybean varieties.…

Dynamical Systems · Mathematics 2023-10-05 Aniket Banerjee , Ivair Valmorbida , Matthew O'Neal , Rana Parshad

Mechanisms of immunity, and of the host-pathogen interactions in general are among the most fundamental problems of medicine, ecology, and evolution studies. Here, we present a microscopic, protein-level, sequence-based model of immune…

Biomolecules · Quantitative Biology 2007-11-22 Muyoung Heo , Konstantin B. Zeldovich , Eugene I. Shakhnovich

Using binary hard disk mixture models, we studied the two-dimensional ordering of bacteriorhodopsins in a lipid bilayer. The phase diagrams were calculated using the thermodynamic perturbation theory. We examined two types of effective…

Soft Condensed Matter · Physics 2022-12-08 Keiju Suda Ayumi Suematsu Ryo Akiyama

The provision of additional food (AF) sources to an introduced predator has been identified as a mechanism to improve pest control. However, AF models with prey dependent functional responses can cause unbounded growth of the predator…

Dynamical Systems · Mathematics 2023-12-20 Sureni Wickramasooriya , Jonathan Martin , Aniket Banerjee , Rana D. Parshad

We analyze a mathematical model of the epizootic of Hantavirus in mice population, including the effect of species which compete with the host. We show that the existence of the second species has an important consequence for the prevalence…

Populations and Evolution · Quantitative Biology 2007-05-23 Ignacio D. Peixoto , Guillermo Abramson

The CRISPR (clustered regularly interspaced short palindromic repeats) mechanism allows bacteria to adaptively defend against phages by acquiring short genomic sequences (spacers) that target specific sequences in the viral genome. We…

Biological Physics · Physics 2019-09-11 Serena Bradde , Marija Vucelja , Tiberiu Tesileanu , Vijay Balasubramanian

We present a systematic comparison and analysis of four discrete-time, host--parasitoid models. For each model, we specify that density-dependent effects occur prior to parasitism in the life cycle of the host. We compare density-dependent…

Dynamical Systems · Mathematics 2020-01-23 Kelsey Marcinko , Mark Kot

Essential oils have antifungal and antipathogenic effects and therefore are targets in plant pathology research for their potential uses as natural substitutes for inorganic plant pesticides. Beauveria bassiana, an entomopathogenic fungus,…

Quantitative Methods · Quantitative Biology 2010-10-06 Luong Nguyen , Dubravka Bodiroga , Reka Kelemen , Jaewook Joo , Kimberly D. Gwinn

Cross-protection, which refers to a process whereby artificially inoculating a plant with a mild strain provides protection against a more aggressive isolate of the virus, is known to be an effective tool of disease control in plants. In…

Populations and Evolution · Quantitative Biology 2016-12-07 G. Neofytou , Y. N. Kyrychko , K. B. Blyuss

We develop a model for speciation due to postzygotic incompatibility generated by autoimmune reactions. The model is based on predator-prey interactions between a host plants and their pathogens. Such interactions are often…

Populations and Evolution · Quantitative Biology 2010-11-02 I. Ispolatov , Michael Doebeli

We are interested in modeling some two-level population dynamics, resulting from the interplay of ecological interactions and phenotypic variation of individuals (or hosts) and the evolution of cells (or parasites) of two types living in…

Probability · Mathematics 2011-01-21 Sylvie Méléard , Sylvie Roelly

Plant-pollinator associations are often seen as purely mutualistic, while in reality they can be more complex. Indeed they may also display a diverse array of antagonistic interactions, such as competition and victim--exploiter…

Populations and Evolution · Quantitative Biology 2016-07-21 Tomás A. Revilla , Francisco Encinas-Viso

The evolution of antimicrobial resistance can be strongly affected by variations of antimicrobial concentration. Here, we study the impact of periodic alternations of absence and presence of antimicrobial on resistance evolution in a…

Populations and Evolution · Quantitative Biology 2020-04-14 Loïc Marrec , Anne-Florence Bitbol

To examine the co-evolution of quantitative traits in hosts and parasites, we present and study a co-evolutionary model of a social parasite-host system that incorporates (1) ecological dynamics that feed back into their co-evolutionary…

Dynamical Systems · Mathematics 2015-05-19 Yun Kang , Jennifer Harrison Fewell

The vertebrate adaptive immune system provides a flexible and diverse set of molecules to neutralize pathogens. Yet, viruses such as HIV can cause chronic infections by evolving as quickly as the adaptive immune system, forming an…

Populations and Evolution · Quantitative Biology 2016-06-22 Armita Nourmohammad , Jakub Otwinowski , Joshua B. Plotkin

Human pathogens transmitted through environmental pathways are subject to stress and pressures outside of the host. These pressures may cause pathogen pathovars to diverge in their environmental persistence and their infectivity on an…

Populations and Evolution · Quantitative Biology 2018-02-16 Andrew F. Brouwer , Marisa C. Eisenberg , Nancy G. Love , Joseph N. S. Eisenberg

In this work we present a general framework for the modeling of the transmission dynamics of macroparasites which do not reproduce within the host like Ascaris lumbricoides, Trichuris trichiura, Necator americanus y Ancylostoma duodenale.…

Populations and Evolution · Quantitative Biology 2022-05-19 Gonzalo Maximiliano Lopez , Juan Pablo Aparicio

We study a theoretical model for the toxin-antitoxin (hok/sok) mechanism for plasmid maintenance in bacteria. Toxin-antitoxin systems enforce the maintenance of a plasmid through post-segregational killing of cells that have lost the…

Biological Physics · Physics 2018-12-18 Chen Chris Gong , Stefan Klumpp

Protein-protein interactions comprise both transport and reaction steps. During the transport step, anisotropy of proteins and their complexes is important both for hydrodynamic diffusion and accessibility of the binding site. Using a…

Biomolecules · Quantitative Biology 2015-05-18 Jakob Schluttig , Christian B. Korn , Ulrich S. Schwarz

Understanding interactions between membranes requires measurements on well-controlled systems close to natural conditions, in which fluctuations play an important role. We have determined, by grazing incidence X-ray scattering, the…