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We derive an asymptotically consistent morphoelastic shell model to describe the finite deformations of biological tissues using the variational asymptotical method. Biological materials may exhibit remarkable compressibility when under…

Soft Condensed Matter · Physics 2024-07-23 Xiang Yu , Xiaoyi Chen

In this paper, we present a 2D numerical model developed to simulate the dynamics of soft, deformable particles. To accommodate significant particle deformations, the particle surface is represented as a narrow shell composed of mass points…

Computational Physics · Physics 2025-04-01 Yohann Trivino , Vincent Richefeu , Farhang Radjai , Komlanvi Lampoh , Jean-Yves Delenne

We investigate the reflected entropy for bipartite mixed state configurations in a $T\bar{T}$ deformed boundary conformal field theory in $2$ dimensions (BCFT$_2$). The bulk dual is described by asymptotically AdS$_3$ geometries with the…

High Energy Physics - Theory · Physics 2025-07-01 Debarshi Basu , Himanshu Chourasiya , Ankur Dey , Vinayak Raj

Most biological tissues grow by the synthesis of new material close to the tissue's interface, where spatial interactions can exert strong geometric influences on the local rate of growth. These geometric influences may be mechanistic, or…

Numerical Analysis · Mathematics 2020-05-28 Mohd Almie Alias , Pascal R Buenzli

Topological insulators in three dimensions are nonmagnetic insulators that possess metallic surface states as a consequence of the nontrivial topology of electronic wavefunctions in the bulk of the material. They are the first known…

Strongly Correlated Electrons · Physics 2012-01-26 M. Zahid Hasan , Joel E. Moore

Hyperuniform materials, characterized by their suppressed density fluctuations and vanishing structure factors as the wave number approaches zero, represent a unique state of matter that straddles the boundary between order and randomness.…

Disordered Systems and Neural Networks · Physics 2024-08-20 Yiwen Tang , Xinzhi Li , Dapeng Bi

Topology provides an essential concept for achieving unchanged (or protected) quantum properties in the presence of perturbations. A challenge facing realistic applications is that the level of protection displayed in real systems is…

Mesoscale and Nanoscale Physics · Physics 2024-10-29 Anh Ho Hoai , Jian Huang , L. N. Pfeiffer , K. W. West

One of the hallmarks of topological insulators is the correspondence between the value of its bulk topological invariant and the number of topologically protected edge modes observed in a finite-sized sample. This bulk-boundary…

Mesoscale and Nanoscale Physics · Physics 2021-05-04 Ana Silva , Jasper van Wezel

In topological physics, one of the most intriguing phenomena is the presence of topological boundary states, accurately predicted by the well-established bulk-edge correspondence. For example, in three-dimensional Weyl semimetals, Fermi…

Mesoscale and Nanoscale Physics · Physics 2025-06-13 Yingxin Qi , Hanyu Wang , Qinghua Guo , Zhihong Zhu , Biao Yang

A model of multicellular systems with several types of cells is developed from the phase field model. The model is presented as a set of partial differential equations of the field variables, each of which expresses the shape of one cell.…

Biological Physics · Physics 2015-05-30 Makiko Nonomura

The multicellular organization of diverse systems, such as embryos, intestines and tumours, relies on the coordinated migration of cells in 3D curved environments. In these settings, cells establish supracellular patterns of motion,…

Biological Physics · Physics 2021-10-28 Tom Brandstätter , David B. Brückner , Yu Long Han , Ricard Alert , Ming Guo , Chase P. Broedersz

We present a generic framework for modelling three-dimensional deformable shells of active matter that captures the orientational dynamics of the active particles and hydrodynamic interactions on the shell and with the surrounding…

Soft Condensed Matter · Physics 2019-11-20 Luuk Metselaar , Julia M. Yeomans , Amin Doostmohammadi

We develop a general boundary calculus for algebraic phases and use it to formulate an intrinsic structural framework for deformation and obstruction phenomena. Structural boundaries are shown to be finitely detectable and canonically…

Rings and Algebras · Mathematics 2026-05-19 Joe Gildea

Nonlinear transport has emerged as a powerful approach to probe the quantum geometry of electronic wavefunctions, such as Berry curvature and quantum metric, in topological materials. While nonlinear responses governed by bulk quantum…

Mesoscale and Nanoscale Physics · Physics 2025-12-09 Deyi Zhuo , Xiaoda Liu , Huu-Thong Le , Annie G. Wang , Han Tay , Bomin Zhang , Ling-Jie Zhou , Binghai Yan , Chao-Xing Liu , Cui-Zu Chang

We analyze the structure of two dimensional disordered cellular systems generated by extensive computer simulations. These cellular structures are studied as topological trees rooted on a central cell or as closed shells arranged…

Disordered Systems and Neural Networks · Physics 2009-10-30 H. M. Ohlenbusch , T. Aste , B. Dubertret , N. Rivier

Shape transformations of epithelial tissues in three dimensions, which are crucial for embryonic development or in vitro organoid growth, can result from active forces generated within the cytoskeleton of the epithelial cells. How the…

Biological Physics · Physics 2024-12-23 Diana Khoromskaia , Guillaume Salbreux

In two-dimensional conformal field theory, we analyze conformally invariant boundary conditions which break part of the bulk symmetries. When the subalgebra that is preserved by the boundary conditions is the fixed algebra under the action…

High Energy Physics - Theory · Physics 2009-10-31 J. Fuchs , C. Schweigert

Computational models have become an essential part of exploratory protocols in cell biology, as a complement to in vivo or in vitro experiments. These virtual models have the twofold advantage of enabling access to new types of data and…

Medical Physics · Physics 2021-12-20 Maxime Vassaux , Laurent Pieuchot , Karine Anselme , Maxence Bigerelle , Jean-Louis Milan

By modifying and calibrating an active vertex model to experiments, we have simulated numerically a confluent cellular monolayer spreading on an empty space and the collision of two monolayers of different cells in an antagonistic migration…

Soft Condensed Matter · Physics 2021-04-02 L. L. Bonilla , A. Carpio , C. Trenado

We discuss (2+1)-dimensional gapless surface theories of bulk (3+1)-dimensional topological phases, such as the BF theory at level $\mathrm{K}$, and its generalization. In particular, we put these theories on a flat (2+1) dimensional torus…

Strongly Correlated Electrons · Physics 2016-07-27 Xiao Chen , Apoorv Tiwari , Shinsei Ryu