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The Vertex Model for epithelia models the apical surface of the tissue by a tiling, with polygons representing cells and edges representing cell-cell junctions. The mechanics are described by an energy governed by deviations from a target…

Biological Physics · Physics 2024-10-10 Michael F. Staddon , Carl D. Modes

In this paper a macroscopic model of tumor cord growth is developed, relying on the mathematical theory of deformable porous media. Tumor is modeled as a saturated mixture of proliferating cells, extracellular fluid and extracellular…

Mathematical Physics · Physics 2010-11-09 Andrea Tosin

In this paper, we propose a new type of bulk-boundary correspondence as a generic approach to theoretically and experimentally detect fragile topological states. When the fragile phase can be written as a difference of a trivial atomic…

Mesoscale and Nanoscale Physics · Physics 2020-03-18 Zhi-Da Song , Luis Elcoro , B. Andrei Bernevig

Topological quantum error correction based on the manipulation of the anyonic defects constitutes one of the most promising frameworks towards realizing fault-tolerant quantum devices. Hence, it is crucial to understand how these defects…

Quantum Physics · Physics 2025-02-18 Julio C. Magdalena de la Fuente , Jens Eisert , Andreas Bauer

Macroscopic two-dimensional sonic crystals with inversion symmetry are studied to reveal higher-order topological physics in classical wave systems. By tuning a single geometry parameter, the band topology of the bulk and the edges can be…

Mesoscale and Nanoscale Physics · Physics 2020-09-30 Zhan Xiong , Zhi-Kang Lin , Hai-Xiao Wang , Xiujuan Zhang , Ming-Hui Lu , Yan-Feng Chen , Jian-Hua Jiang

We extend the twisted gauge theory model of topological orders in three spatial dimensions to the case where the three spaces have two dimensional boundaries. We achieve this by systematically constructing the boundary Hamiltonians that are…

Strongly Correlated Electrons · Physics 2018-11-13 Hongyu Wang , Yingcheng Li , Yuting Hu , Yidun Wan

There is ample evidence that the bulk dual of a $T\overline{T}$ deformed holographic CFT is a gravitational system with a finite area cutoff boundary. For states dual to black holes, the finite cutoff surface cannot be moved beyond the…

High Energy Physics - Theory · Physics 2025-07-03 Shadi Ali Ahmad , Ahmed Almheiri , Simon Lin

The rheology of biological tissues is important for their function, and we would like to better understand how single cells control global tissue properties such as tissue fluidity. A confluent tissue can fluidize when cells diffuse by…

Soft Condensed Matter · Physics 2019-05-31 Preeti Sahu , Janice Kang , Gonca Erdemci-Tandogan , M. Lisa Manning

Cell walls define a cell shape in bacteria. They are rigid to resist large internal pressures, but remarkably plastic to adapt to a wide range of external forces and geometric constraints. Currently, it is unknown how bacteria maintain…

Soft Condensed Matter · Physics 2014-05-01 Ariel Amir , Farinaz Babaeipour , Dustin B. McIntosh , David R. Nelson , Suckjoon Jun

I consider how cell shape and environmental geometry affect the rate of nutrient capture and the consequent maximum growth rate of a cell, focusing on rod-like species like \textit{E.\ coli}. Simple modeling immediately implies that it is…

Biological Physics · Physics 2014-03-27 Jonathan Landy

It is often thought that emergent phenomena in topological phases of matter are destroyed when tuning to a critical point. In particular, topologically protected edge states supposedly delocalize when the bulk correlation length diverges.…

Strongly Correlated Electrons · Physics 2020-03-13 Ruben Verresen

We consider a coupled bulk-surface system of partial differential equations with nonlinear coupling modelling receptor-ligand dynamics. The model arises as a simplification of a mathematical model for the reaction between cell surface…

Analysis of PDEs · Mathematics 2016-11-08 Charles M. Elliott , Thomas Ranner , Chandrasekhar Venkataraman

In recent years there has been a growing interest in the statistical properties of surfaces growing under deposition of material. Yet it is clear that a theory describing the evolution of a surface should at the same time describe the…

Statistical Mechanics · Physics 2007-05-23 Eytan Katzav , Sam F. Edwards , Moshe Schwartz

In the present paper we investigate the mechanics of systems of affinely-rigid bodies, i.e., bodies rigid in the sense of affine geometry. Certain physical applications are possible in modelling of molecular crystals, granular media, and…

Topological materials occupy the central stage in the modern condensed matter physics because of their robust metallic edge or surface states protected by the topological invariant, characterizing the electronic band structure in the bulk.…

Mesoscale and Nanoscale Physics · Physics 2021-08-05 Bitan Roy , Vladimir Juricic

In processes such as embryo shaping, wound healing, and malignant cell invasion, epithelial cells transition between dispersed phases, where the cells move independently, and condensed phases, where they aggregate and deform to close gaps,…

Soft Condensed Matter · Physics 2024-09-25 Anshuman Pasupalak , Zeng Wu , Massimo Pica Ciamarra

The bulk-boundary correspondence is a generic feature of topological states of matter, reflecting the intrinsic relation between topological bulk and boundary states. For example, robust edge states propagate along the edges and corner…

Mesoscale and Nanoscale Physics · Physics 2022-11-15 Ai-Lei He , Wei-Wei Luo , Yuan Zhou , Yi-Fei Wang , Hong Yao

Methods allowing the synthesis of realistic cell shapes could help generate training data sets to improve cell tracking and segmentation in biomedical images. Deep generative models for cell shape synthesis require a light-weight and…

Computer Vision and Pattern Recognition · Computer Science 2022-10-07 David Wiesner , Julian Suk , Sven Dummer , David Svoboda , Jelmer M. Wolterink

Continuum grid-like frames composed of rigidly jointed beams are classic subjects in the field of structural mechanics, whose topological dynamical properties have only recently been revealed. For two-dimensional frames, higher-order…

Materials Science · Physics 2026-05-05 Yimeng Sun , Jiacheng Xing , Li-Hua Shao , Jianxiang Wang

The mapping class group of a surface with one boundary component admits numerous interesting representations including as a group of automorphisms of a free group and as a group of symplectic transformations. Insofar as the mapping class…

Geometric Topology · Mathematics 2009-06-01 Jorgen Ellegaard Andersen , Alex James Bene , R. C. Penner
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