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Linked Data is used in various fields as a new way of structuring and connecting data. Cultural heritage institutions have been using linked data to improve archival descriptions and facilitate the discovery of information. Most archival…

Computer Vision and Pattern Recognition · Computer Science 2023-11-28 Mariana Dias , Carla Teixeira Lopes

This paper considers open-set recognition (OSR) of plankton images. Plankton include a diverse range of microscopic aquatic organisms that have an important role in marine ecosystems as primary producers and as a base of food webs. Given…

Computer Vision and Pattern Recognition · Computer Science 2025-03-17 Joona Kareinen , Annaliina Skyttä , Tuomas Eerola , Kaisa Kraft , Lasse Lensu , Sanna Suikkanen , Maiju Lehtiniemi , Heikki Kälviäinen

Colonoscopy screening effectively identifies and removes polyps before they progress to colorectal cancer (CRC), but current follow-up guidelines rely primarily on histopathological features, overlooking other important CRC risk factors.…

Computer Vision and Pattern Recognition · Computer Science 2025-04-15 Shuai Jiang , Christina Robinson , Joseph Anderson , William Hisey , Lynn Butterly , Arief Suriawinata , Saeed Hassanpour

creating automated processes in different areas of medical science with the application of engineering tools is a highly growing field over recent decades. In this context, many medical image processing and analyzing researchers use…

Computer Vision and Pattern Recognition · Computer Science 2019-07-17 Hamed Talebi , Amin Ranjbar , Alireza Davoudi , Hamed Gholami , Mohammad Bagher Menhaj

Optical character recognition (OCR) is a vital process that involves the extraction of handwritten or printed text from scanned or printed images, converting it into a format that can be understood and processed by machines. This enables…

Computer Vision and Pattern Recognition · Computer Science 2023-12-20 Mahmoud SalahEldin Kasem , Mohamed Mahmoud , Hyun-Soo Kang

Cosmic ray (CR) identification and replacement are critical components of imaging and spectroscopic reduction pipelines involving solid-state detectors. We present deepCR, a deep learning based framework for CR identification and subsequent…

Instrumentation and Methods for Astrophysics · Physics 2020-02-05 Keming Zhang , Joshua S. Bloom

The process of manually searching for relevant instances in, and extracting information from, clinical databases underpin a multitude of clinical tasks. Such tasks include disease diagnosis, clinical trial recruitment, and continuing…

Signal Processing · Electrical Eng. & Systems 2021-10-05 Dani Kiyasseh , Tingting Zhu , David A. Clifton

Pathologists routinely alternate between different magnifications when examining Whole-Slide Images, allowing them to evaluate both broad tissue morphology and intricate cellular details to form comprehensive diagnoses. However, existing…

Detecting cancers at early stages can dramatically reduce mortality rates. Therefore, practical cancer screening at the population level is needed. Here, we develop a comprehensive detection system to classify all common cancer types. By…

Molecular Networks · Quantitative Biology 2021-03-30 Anyou Wang , Rong Hai , Paul J Rider , Qianchuan He

Deep learning has been reported to achieve high performances in the detection of skin cancer, yet many challenges regarding the reproducibility of results and biases remain. This study is a replication (different data, same analysis) of a…

Computer Vision and Pattern Recognition · Computer Science 2025-10-02 Nikolette Pedersen , Regitze Sydendal , Andreas Wulff , Ralf Raumanns , Eike Petersen , Veronika Cheplygina

Extrachromosomal DNA (ecDNA) represents one of the most pressing challenges in cancer biology: circular DNA structures that amplify oncogenes, evade targeted therapies, and drive tumor evolution in ~30% of aggressive cancers. Despite its…

Genomics · Quantitative Biology 2026-04-09 Bryan Cheng , Jasper Zhang

Cell imaging and analysis are fundamental to biomedical research because cells are the basic functional units of life. Among different cell-related analysis, cell counting and detection are widely used. In this paper, we focus on one common…

Computer Vision and Pattern Recognition · Computer Science 2019-04-19 Haoyi Liang , Aijaz Naik , Cedric L. Williams , Jaideep Kapur , Daniel S. Weller

Radiation therapy has emerged as one of the preferred techniques to treat brain cancer patients. During treatment, a very high dose of radiation is delivered to a very narrow area. Prescribed radiation therapy for brain cancer requires…

Computer Vision and Pattern Recognition · Computer Science 2017-04-06 Jose Dolz , Nicolas Reyns , Nacim Betrouni , Dris Kharroubi , Mathilde Quidet , Laurent Massoptier , Maximilien Vermandel

Machine learning can precisely identify different cancer tumors at any stage by classifying cancerous and healthy samples based on their genomic profile. We have developed novel methods of MLAC (Machine Learning Against Cancer) achieving…

Genomics · Quantitative Biology 2020-09-15 Arash Hooshmand

Hierarchical clustering is a fundamental task often used to discover meaningful structures in data, such as phylogenetic trees, taxonomies of concepts, subtypes of cancer, and cascades of particle decays in particle physics. Typically…

Data Structures and Algorithms · Computer Science 2020-10-23 Craig S. Greenberg , Sebastian Macaluso , Nicholas Monath , Ji-Ah Lee , Patrick Flaherty , Kyle Cranmer , Andrew McGregor , Andrew McCallum

Uncontrolled cell division in the brain is what gives rise to brain tumors. If the tumor size increases by more than half, there is little hope for the patient's recovery. This emphasizes the need of rapid and precise brain tumor diagnosis.…

Image and Video Processing · Electrical Eng. & Systems 2025-03-11 Plabon Paul , Md. Nazmul Islam , Fazle Rafsani , Pegah Khorasani , Shovito Barua Soumma

Cell detection is a fundamental task in computational pathology that can be used for extracting high-level medical information from whole-slide images. For accurate cell detection, pathologists often zoom out to understand the tissue-level…

Colonic polyps are well-recognized precursors to colorectal cancer (CRC), typically detected during colonoscopy. However, the variability in appearance, location, and size of these polyps complicates their detection and removal, leading to…

Occlusion is a common problem with biometric recognition in the wild. The generalization ability of CNNs greatly decreases due to the adverse effects of various occlusions. To this end, we propose a novel unified framework integrating the…

Computer Vision and Pattern Recognition · Computer Science 2023-07-28 Min Ren , Yunlong Wang , Yuhao Zhu , Kunbo Zhang , Zhenan Sun

Colonoscopy is used for colorectal cancer (CRC) screening. Extracting details of the colonoscopy findings from free text in electronic health records (EHRs) can be used to determine patient risk for CRC and colorectal screening strategies.…

Computation and Language · Computer Science 2021-08-26 Shashank Reddy Vadyala , Eric A. Sherer