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Vital to primary visual processing, retinal circuitry shows many similar structures across a very broad array of species, both vertebrate and non-vertebrate, especially functional components such as lateral inhibition. This surprisingly…

Neural and Evolutionary Computing · Computer Science 2021-02-23 Ziyi Gong , Paul Munro

A biophysical model of epimorphic regeneration based on a continuum percolation process of fully penetrable disks in two dimensions is proposed. All cells within a randomly chosen disk of the regenerating organism are assumed to receive a…

Biological Physics · Physics 2023-11-06 Vladimir García-Morales

Latent variable models such as the Variational Auto-Encoder (VAE) have become a go-to tool for analyzing biological data, especially in the field of single-cell genomics. One remaining challenge is the interpretability of latent variables…

Genomics · Quantitative Biology 2023-02-20 Romain Lopez , Nataša Tagasovska , Stephen Ra , Kyunghyn Cho , Jonathan K. Pritchard , Aviv Regev

We develop a theory characterizing the fundamental capability of deep neural networks to learn, from evolution traces, the logical rules governing the behavior of cellular automata (CA). This is accomplished by first establishing a novel…

Artificial Intelligence · Computer Science 2024-04-09 Yani Zhang , Helmut Bölcskei

Our knowledge of how individual cells self-organize to form complex multicellular systems is being revolutionized by a data outburst, coming from high-throughput experimental breakthroughs such as single-cell RNA sequencing and spatially…

Cell Behavior · Quantitative Biology 2021-04-20 Gabriel Torregrosa , Jordi Garcia-Ojalvo

We develop a novel probabilistic generative model based on the variational autoencoder approach. Notable aspects of our architecture are: a novel way of specifying the latent variables prior, and the introduction of an ordinality enforcing…

Machine Learning · Statistics 2018-12-20 Joel Jaskari , Jyri J. Kivinen

Evolution is the theory that plants and animals today have come from kinds that have existed in the past. Scientists such as Charles Darwin and Alfred Wallace dedicate their life to observe how species interact with their environment, grow,…

Neural and Evolutionary Computing · Computer Science 2022-09-16 Manasa Josyula

Deep generative models have been praised for their ability to learn smooth latent representation of images, text, and audio, which can then be used to generate new, plausible data. However, current generative models are unable to work with…

Machine Learning · Computer Science 2019-09-09 Bidisha Samanta , Abir De , Gourhari Jana , Pratim Kumar Chattaraj , Niloy Ganguly , Manuel Gomez-Rodriguez

We introduce CGA, a conditional VAE architecture, to control, generate, and augment text. CGA is able to generate natural English sentences controlling multiple semantic and syntactic attributes by combining adversarial learning with a…

Computation and Language · Computer Science 2020-10-05 Giuseppe Russo , Nora Hollenstein , Claudiu Musat , Ce Zhang

Within the class of stochastic cellular automata models of traffic flows, we look at the velocity dependent randomization variant (VDR-TCA) whose parameters take on a specific set of extreme values. These initial conditions lead us to the…

Cellular Automata and Lattice Gases · Physics 2007-05-23 Sven Maerivoet , Bart De Moor

We report experimental extensions of Lenia, a continuous cellular automata family capable of producing lifelike self-organizing autonomous patterns. The rule of Lenia was generalized into higher dimensions, multiple kernels, and multiple…

Cellular Automata and Lattice Gases · Physics 2021-07-12 Bert Wang-Chak Chan

This project explores speculative evolution through a 3D implementation of Conway's Game of Life, using procedural simulation to generate unfamiliar extraterrestrial organic forms. By applying a volumetric optimized workflow, the raw…

Cellular Automata and Lattice Gases · Physics 2025-05-06 Amir Hossein Khazaei

A small-world cellular automaton network has been formulated to simulate the long-range interactions of complex networks using unconventional computing methods in this paper. Conventional cellular automata use local updating rules. The new…

Cellular Automata and Lattice Gases · Physics 2010-03-26 Xin-She Yang , Young Z. L. Yang

Saliency detection, finding the most important parts of an image, has become increasingly popular in computer vision. In this paper, we introduce Hierarchical Cellular Automata (HCA) -- a temporally evolving model to intelligently detect…

Computer Vision and Pattern Recognition · Computer Science 2017-05-29 Yao Qin , Mengyang Feng , Huchuan Lu , Garrison W. Cottrell

Human vision involves parsing and representing objects and scenes using structured representations based on part-whole hierarchies. Computer vision and machine learning researchers have recently sought to emulate this capability using…

Computer Vision and Pattern Recognition · Computer Science 2025-12-30 Ares Fisher , Rajesh P. N. Rao

In the article a transition from pattern evolution equation of reaction-diffusion type to a cellular automaton (CA) is described. The applicability of CA is demonstrated by generating patterns of complex irregular structure on a hexagonal…

Graphics · Computer Science 2018-07-09 Lovrenc Švegl , Igor Grabec

Neural architectures inspired by our own human cognitive system, such as the recently introduced world models, have been shown to outperform traditional deep reinforcement learning (RL) methods in a variety of different domains. Instead of…

Neural and Evolutionary Computing · Computer Science 2019-06-24 Sebastian Risi , Kenneth O. Stanley

In both natural and artificial studies, evolution is often seen as synonymous to natural selection. Individuals evolve under pressures set by environments that are either reset or do not carry over significant changes from previous…

Populations and Evolution · Quantitative Biology 2023-05-17 Eleni Nisioti , Clément Moulin-Frier

T-cell receptors (TCR) are key proteins of the adaptive immune system, generated randomly in each individual, whose diversity underlies our ability to recognize infections and malignancies. Modeling the distribution of TCR sequences is of…

Quantitative Methods · Quantitative Biology 2020-07-01 Giulio Isacchini , Zachary Sethna , Yuval Elhanati , Armita Nourmohammad , Aleksandra M. Walczak , Thierry Mora

We explore whether useful temporal neural generative models can be learned from sequential data without back-propagation through time. We investigate the viability of a more neurocognitively-grounded approach in the context of unsupervised…

Machine Learning · Computer Science 2017-12-01 Alexander G. Ororbia , Patrick Haffner , David Reitter , C. Lee Giles
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