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For several purposes in Natural Language Processing (NLP), such as Information Extraction, Sentiment Analysis or Chatbot, Named Entity Recognition (NER) holds an important role as it helps to determine and categorize entities in text into…

Computation and Language · Computer Science 2020-03-24 Thong Nguyen , Duy Nguyen , Pramod Rao

Drug side effects are a major global health concern, necessitating advanced methods for their accurate detection and analysis. While Large Language Models (LLMs) offer promising conversational interfaces, their inherent limitations,…

Information Retrieval · Computer Science 2025-07-21 Shad Nygren , Pinar Avci , Andre Daniels , Reza Rassol , Afshin Beheshti , Diego Galeano

Open Relation Extraction (OpenRE) aims to discover novel relations from open domains. Previous OpenRE methods mainly suffer from two problems: (1) Insufficient capacity to discriminate between known and novel relations. When extending…

Computation and Language · Computer Science 2023-03-15 Yangning Li , Yinghui Li , Xi Chen , Hai-Tao Zheng , Ying Shen , Hong-Gee Kim

Drug discovery is a critical task in biomedical natural language processing (NLP), yet explainable drug discovery remains underexplored. Meanwhile, large language models (LLMs) have shown remarkable abilities in natural language…

Computation and Language · Computer Science 2025-02-28 Kai Zhang , Rui Zhu , Shutian Ma , Jingwei Xiong , Yejin Kim , Fabricio Murai , Xiaozhong Liu

We present a machine learning-based anomaly detection product, AI Detect and Respond (AIDR), that monitors Walmart's business and system health in real-time. During the validation over 3 months, the product served predictions from over 3000…

The opioid overdose epidemic remains a critical public health crisis, particularly in the United States, leading to significant mortality and societal costs. Social media platforms like Reddit provide vast amounts of unstructured data that…

Computation and Language · Computer Science 2025-08-13 Muhammad Ahmad , Rita Orji , Fida Ullah , Ildar Batyrshin , Grigori Sidorov

Nonmedical opioid use is an urgent public health challenge, with far-reaching clinical and social consequences that are often underreported in traditional healthcare settings. Social media platforms, where individuals candidly share…

Computation and Language · Computer Science 2025-08-28 Sumon Kanti Dey , Jeanne M. Powell , Azra Ismail , Jeanmarie Perrone , Abeed Sarker

Over the recent years, the emergence of large language models (LLMs) has given rise to a proliferation of domain-specific models that are intended to reflect the particularities of linguistic context and content as a correlate of the…

Computation and Language · Computer Science 2024-02-20 Chris von Csefalvay

The increased adoption of Electronic Health Records(EHRs) has brought changes to the way the patient care is carried out. The rich heterogeneous and temporal data space stored in EHRs can be leveraged by machine learning models to capture…

Machine Learning · Computer Science 2019-04-11 Maria Bampa

In our study, we evaluated large language model (LLM) performance on pharmacy licensure-style question-answering tasks and developed an external knowledge integration method to improve accuracy. We benchmarked ten LLMs with varying…

The adverse drug reactions (ADRs) predicted based on the biased records in FAERS (U.S. Food and Drug Administration Adverse Event Reporting System) may mislead diagnosis online. Generally, such problems are solved by optimizing reporting…

Machine Learning · Computer Science 2025-12-30 Tao Li , Peilin Li , Kui Lu , Yilei Wang , Junliang Shang , Guangshun Li , Huiyu Zhou

Named-entity recognition (NER) detects texts with predefined semantic labels and is an essential building block for natural language processing (NLP). Notably, recent NER research focuses on utilizing massive extra data, including…

Computation and Language · Computer Science 2023-05-09 Yuxiang Zhang , Junjie Wang , Xinyu Zhu , Tetsuya Sakai , Hayato Yamana

Drug-drug interaction (DDI) is a vital information when physicians and pharmacists intend to co-administer two or more drugs. Thus, several DDI databases are constructed to avoid mistakenly combined use. In recent years, automatically…

Computation and Language · Computer Science 2017-05-19 Zibo Yi , Shasha Li , Jie Yu , Qingbo Wu

Named Entity Recognition (NER) and Relation Extraction (RE) are essential tools in distilling knowledge from biomedical literature. This paper presents our findings from participating in BioNLP Shared Tasks 2019. We addressed Named Entity…

Computation and Language · Computer Science 2019-10-09 Usama Yaseen , Pankaj Gupta , Hinrich Schütze

Post-Traumatic Stress Disorder (PTSD) remains underdiagnosed in clinical settings, presenting opportunities for automated detection to identify patients. This study evaluates natural language processing approaches for detecting PTSD from…

Computation and Language · Computer Science 2026-01-08 Feng Chen , Dror Ben-Zeev , Gillian Sparks , Arya Kadakia , Trevor Cohen

Named entity recognition (NER) is a widely applicable natural language processing task and building block of question answering, topic modeling, information retrieval, etc. In the medical domain, NER plays a crucial role by extracting…

Computation and Language · Computer Science 2020-11-13 Veysel Kocaman , David Talby

Adverse drug events (ADEs) are a major safety issue in clinical trials. Thus, predicting ADEs is key to developing safer medications and enhancing patient outcomes. To support this effort, we introduce CT-ADE, a dataset for multilabel ADE…

Computation and Language · Computer Science 2025-03-11 Anthony Yazdani , Alban Bornet , Philipp Khlebnikov , Boya Zhang , Hossein Rouhizadeh , Poorya Amini , Douglas Teodoro

Natural language understanding (NLU) using neural network pipelines often requires additional context that is not solely present in the input data. Through Prior research, it has been evident that NLU benchmarks are susceptible to…

Computation and Language · Computer Science 2024-03-06 Yuxin Zi , Hariram Veeramani , Kaushik Roy , Amit Sheth

Clinical notes are an essential component of a health record. This paper evaluates how natural language processing (NLP) can be used to identify the risk of acute care use (ACU) in oncology patients, once chemotherapy starts. Risk…

Computation and Language · Computer Science 2023-06-28 Claudio Fanconi , Marieke van Buchem , Tina Hernandez-Boussard

Named Entity Recognition (NER) is a challenging task that extracts named entities from unstructured text data, including news, articles, social comments, etc. The NER system has been studied for decades. Recently, the development of Deep…

Computation and Language · Computer Science 2020-09-03 Jiuniu Wang , Wenjia Xu , Xingyu Fu , Guangluan Xu , Yirong Wu