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In the last years, tens of thousands gene expression profiles for cells of several organisms have been monitored. Gene expression is a complex transcriptional process where mRNA molecules are translated into proteins, which control most of…

Biomolecules · Quantitative Biology 2009-11-11 T. Ochiai , J. C. Nacher , T. Akutsu

Clustering is widely used in different field such as biology, psychology, and economics. Most traditional clustering algorithms are limited to handling datasets that contain either numeric or categorical attributes. However, datasets with…

Databases · Computer Science 2019-07-03 Trupti M. Kodinariya Dr. Prashant R. Makwana

Background: Selecting feature genes to predict phenotypes is one of the typical tasks in analyzing genomics data. Though many general-purpose algorithms were developed for prediction, dealing with highly correlated genes in the prediction…

Applications · Statistics 2022-04-11 Li Xing , Songwan Joun , Kurt Mackay , Mary Lesperance , Xuekui Zhang

We study supervised learning problems using clustering constraints to impose structure on either features or samples, seeking to help both prediction and interpretation. The problem of clustering features arises naturally in text…

Machine Learning · Computer Science 2016-09-20 Vincent Roulet , Fajwel Fogel , Alexandre d'Aspremont , Francis Bach

Dynamic model reduction in power systems is necessary for improving computational efficiency. Traditional model reduction using linearized models or online analysis is not adequate to capture dynamic behaviors of the power system,…

A natural way to characterize the cluster structure of a dataset is by finding regions containing a high density of data. This can be done in a nonparametric way with a kernel density estimate, whose modes and hence clusters can be found…

Machine Learning · Computer Science 2015-03-03 Miguel Á. Carreira-Perpiñán

Data mining focuses on discovering interesting, non-trivial and meaningful information from large datasets. Data clustering is one of the unsupervised and descriptive data mining task which group data based on similarity features and…

Neural and Evolutionary Computing · Computer Science 2023-05-09 Pitawelayalage Dasun Dileepa Pitawela , Gamage Upeksha Ganegoda

One key use of k-means clustering is to identify cluster prototypes which can serve as representative points for a dataset. However, a drawback of using k-means cluster centers as representative points is that such points distort the…

Machine Learning · Statistics 2019-11-15 Arvind Krishna , Simon Mak , Roshan Joseph

Segmentation of a colour image composed of different kinds of texture regions can be a hard problem, namely to compute for an exact texture fields and a decision of the optimum number of segmentation areas in an image when it contains…

Artificial Intelligence · Computer Science 2007-05-23 Vitorino Ramos , Fernando Muge

Cluster analysis methods are used to identify homogeneous subgroups in a data set. In biomedical applications, one frequently applies cluster analysis in order to identify biologically interesting subgroups. In particular, one may wish to…

Methodology · Statistics 2016-09-23 Sheila Gaynor , Eric Bair

Cluster-based information retrieval is one of the Information retrieval(IR) tools that organize, extract features and categorize the web documents according to their similarity. Unlike traditional approaches, cluster-based IR is fast in…

Artificial Intelligence · Computer Science 2020-08-04 Sarah Hussein Toman , Mohammed Hamzah Abed , Zinah Hussein Toman

Curve registration and clustering are fundamental tools in the analysis of functional data. While several methods have been developed and explored for either task individually, limited work has been done to infer functional clusters and…

Methodology · Statistics 2014-03-28 Yafeng Zhang , Donatello Telesca

Utilizing the sample size of a dataset, the random cluster model is employed in order to derive an estimate of the mean number of K-Means clusters to form during classification of a dataset.

Machine Learning · Computer Science 2016-02-12 Robert A. Murphy

This paper presents a new statistical method for clustering step data, a popular form of health record data easily obtained from wearable devices. Since step data are high-dimensional and zero-inflated, classical methods such as K-means and…

Methodology · Statistics 2020-10-16 Wookyeong Song , Hee-Seok Oh , Yaeji Lim , Ying Kuen Cheung

In the analysis of cluster data, the regression coefficients are frequently assumed to be the same across all clusters. This hampers the ability to study the varying impacts of factors on each cluster. In this paper, a semiparametric model…

Statistics Theory · Mathematics 2009-08-25 Wenyang Zhang , Jianqing Fan , Yan Sun

The K-means algorithm is arguably the most popular data clustering method, commonly applied to processed datasets in some "feature spaces", as is in spectral clustering. Highly sensitive to initializations, however, K-means encounters a…

Machine Learning · Computer Science 2019-06-04 Feiyu Chen , Yuchen Yang , Liwei Xu , Taiping Zhang , Yin Zhang

There has been much interest recently in developing fair clustering algorithms that seek to do justice to the representation of groups defined along sensitive attributes such as race and gender. We observe that clustering algorithms could…

Machine Learning · Computer Science 2023-01-02 Stanley Simoes , Deepak P , Muiris MacCarthaigh

We address the problem of data clustering by introducing an unsupervised, parameter free approach based on maximum likelihood principle. Starting from the observation that data sets belonging to the same cluster share a common information,…

Statistical Mechanics · Physics 2009-11-07 Lorenzo Giada , Matteo Marsili

In this paper, the decades-old clustering method k-means is revisited. The original distortion minimization model of k-means is addressed by a pure stochastic minimization procedure. In each step of the iteration, one sample is tentatively…

Machine Learning · Computer Science 2020-05-20 Wan-Lei Zhao , Run-Qing Chen , Hui Ye , Chong-Wah Ngo

The study of biological processes can greatly benefit from tools that automatically predict gene functions or directly cluster genes based on shared functionality. Existing data mining methods predict protein functionality by exploiting…

Machine Learning · Computer Science 2020-11-20 Kaiyu Shen , Razvan Bunescu , Sarah E. Wyatt