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The accumulation of beneficial mutations on many competing genetic backgrounds in rapidly adapting populations has a striking impact on evolutionary dynamics. This effect, known as clonal interference, causes erratic fluctuations in the…

Populations and Evolution · Quantitative Biology 2013-05-31 Katya Kosheleva , Michael Desai

Moran or Wright-Fisher processes are probably the most well known model to study the evolution of a population under various effects. Our object of study will be the Simpson index which measures the level of diversity of the population, one…

Probability · Mathematics 2018-09-25 Arnaud Personne , Arnaud Guillin , Franck Jabot , Arnaud Guillin

In this paper we study a class of stochastic individual-based models that describe the evolution of haploid populations where each individual is characterised by a phenotype and a genotype. The phenotype of an individual determines its…

Probability · Mathematics 2017-08-07 Martina Baar , Anton Bovier

The dynamics of populations is rich, taking into account that both, the individual's actions and the population's fitness are coupled. The way in which an individual chooses a strategy depends off course on the interaction with other…

Biological Physics · Physics 2007-07-20 Juan G. Diaz Ochoa

We consider a recent innovative theory by Chastain et al. on the role of sex in evolution [PNAS'14]. In short, the theory suggests that the evolutionary process of gene recombination implements the celebrated multiplicative weights updates…

Machine Learning · Computer Science 2015-02-19 Reshef Meir , David Parkes

Mutations are typically classified by their effects on the nucleotide sequence and by their size. Here, we argue that if our main aim is to understand the effect of mutations on evolutionary outcomes (such as adaptation or speciation), we…

Other Quantitative Biology · Quantitative Biology 2020-09-30 Emma L. Berdan , Alexandre Blanckaert , Tanja Slotte , Alexander Suh , Anja M. Westram , Inês Fragata

A strong demographic Allee effect in which the expected population growth rate is negative below a certain critical population size can cause high extinction probabilities in small introduced populations. However, many species are…

Populations and Evolution · Quantitative Biology 2013-11-22 Meike J. Wittmann , Wilfried Gabriel , Dirk Metzler

How do genes affect cognitive ability or other human quantitative traits such as height or disease risk? Progress on this challenging question is likely to be significant in the near future. I begin with a brief review of psychometric…

Genomics · Quantitative Biology 2014-09-02 Stephen D. H. Hsu

Molecular phenotypes are important links between genomic information and organismic functions, fitness, and evolution. Complex phenotypes, which are also called quantitative traits, often depend on multiple genomic loci. Their evolution…

Populations and Evolution · Quantitative Biology 2015-06-12 Armita Nourmohammad , Stephan Schiffels , Michael Laessig

According to the Baldwin Effect learning can guide evolution. This does not suppose that information about what has been learned is transferred back into the genetic code: in the Baldwin Effect complex multi-gene characteristics are…

Populations and Evolution · Quantitative Biology 2024-09-25 Conor Houghton

We deal with the study of the evolution of the allelic frequencies, at a single locus, for a population distributed continuously over a bounded habitat. We consider evolution which occurs under the joint action of selection and arbitrary…

Analysis of PDEs · Mathematics 2017-01-27 Elisa Sovrano

Evolutionary dynamics and patterns of molecular evolution are strongly influenced by selection on linked regions of the genome, but our quantitative understanding of these effects remains incomplete. Recent work has focused on predicting…

Populations and Evolution · Quantitative Biology 2013-05-29 Benjamin H. Good , Michael M. Desai

Testing fit of data to model is fundamentally important to any science, but publications in the field of phylogenetics rarely do this. Such analyses discard fundamental aspects of science as prescribed by Karl Popper. Indeed, not without…

Populations and Evolution · Quantitative Biology 2008-12-31 Peter J. Waddell , Rissa Ota , David Penny

Recurrent mutations are a common phenomenon in population genetics. They may be at the origin of the fixation of a new genotype, if they give a phenotypic advantage to the carriers of the new mutation. In this paper, we are interested in…

Probability · Mathematics 2016-11-28 Charline Smadi

The scientific enterprise depends critically on the preservation of and open access to published data. This basic tenet applies acutely to phylogenies (estimates of evolutionary relationships among species). Increasingly, phylogenies are…

Populations and Evolution · Quantitative Biology 2017-02-08 Andrew F. Magee , Michael R. May , Brian R. Moore

Nowadays, in our globalized world,the local and intercountry movements of population have been increased. This situation makes it important for host countries to do right predictions for the future population of their native people as well…

Populations and Evolution · Quantitative Biology 2016-11-02 F. Buyukkılıç , Z. Ok Bayrakdar , D. Demirhan

Darwin claims in the {\em Origin} that similarity is evidence for common ancestry, but that adaptive similarities are "almost valueless" as evidence. This claim seems reasonable for some adaptive similarities but not for others. Here we…

Populations and Evolution · Quantitative Biology 2015-01-21 Elliott Sober , Mike Steel

The number of substitutions (of nucleotides, amino acids, ...) that take place during the evolution of a sequence is a stochastic variable of fundamental importance in the field of molecular evolution. Although the mean number of…

Populations and Evolution · Quantitative Biology 2016-02-17 Bahram Houchmandzadeh , Marcel Vallade

1) Micro-evolutionary predictions are complicated by ecological feedbacks like density dependence, while ecological predictions can be complicated by evolutionary change. A widely used approach in micro-evolution, quantitative genetics,…

Populations and Evolution · Quantitative Biology 2015-09-07 Tim Coulson , Floriane Plard , Susanne Schindler , Arpat Ozgul , Jean-Michel Gaillard

In a seminal paper, Valiant (2006) introduced a computational model for evolution to address the question of complexity that can arise through Darwinian mechanisms. Valiant views evolution as a restricted form of computational learning,…

Machine Learning · Computer Science 2014-04-07 Elaine Angelino , Varun Kanade
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