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The process of evolutionary diversification unfolds in a vast genotypic space of potential outcomes. During the past century there have been remarkable advances in the development of theory for this diversification, and the theory's success…

Populations and Evolution · Quantitative Biology 2011-10-14 Troy Day

While Neutral Theory famously describes the number of discrete genetic differences in populations, we consider the number of genetic backgrounds under which such differences are observed - setting limits to the generalizability of their…

Populations and Evolution · Quantitative Biology 2023-03-21 Andre F. Ribeiro

The idea that all life on earth traces back to a common beginning dates back at least to Charles Darwin's {\em Origin of Species}. Ever since, biologists have tried to piece together parts of this `tree of life' based on what we can observe…

Populations and Evolution · Quantitative Biology 2014-02-18 Mike Steel

Time evolution of number of species (genera, families, and others), population of them, and size distribution of present ones and life times are studied in terms of a new model, where population of each genetic taxon increases by a (random)…

Populations and Evolution · Quantitative Biology 2007-05-23 Caglar Tuncay

Modern biomedicine is challenged to predict the effects of genetic variation. Systematic functional assays of point mutants of proteins have provided valuable empirical information, but vast regions of sequence space remain unexplored.…

Biomolecules · Quantitative Biology 2017-01-18 Thomas A. Hopf , John B. Ingraham , Frank J. Poelwijk , Michael Springer , Chris Sander , Debora S. Marks

Our theoretical understanding of crossover is limited by our ability to analyze how population diversity evolves. In this study, we provide one of the first rigorous analyses of population diversity and optimization time in a setting where…

Neural and Evolutionary Computing · Computer Science 2024-04-19 Sacha Cerf , Johannes Lengler

"Evidence and Evolution: the Logic behind the Science" was published in 2008 by Elliott Sober. It examines the philosophical foundations of the statistical arguments used to evaluate hypotheses in evolutionary biology, based on simple…

Methodology · Statistics 2010-06-23 Christian P. Robert

Some species exhibit very high levels of DNA sequence variability; there is also evidence for the existence of heritable epigenetic variants that experience state changes at a much higher rate than sequence variants. In both cases, the…

Populations and Evolution · Quantitative Biology 2016-01-13 Brian Charlesworth , Kavita Jain

Many studies have analyzed how variability in reproductive success affects fitness. However, each study tends to focus on a particular problem, leaving unclear the overall structure of variability in populations. This fractured conceptual…

Populations and Evolution · Quantitative Biology 2011-11-08 Steven A. Frank

Selection shapes all kinds of behaviors, including how we make decisions under uncertainty. The risk attitude reflected from it should be simple, flexible, yet consistent. In this paper we engaged evolutionary dynamics to find the decision…

Theoretical Economics · Economics 2022-06-22 Songjia Fan , Yi Tao , Cong Li

We present a model for evolving population which maintains genetic polymorphism. By introducing random mutation in the model population at a constant rate, we observe that the population does not become extinct but survives, keeping…

Soft Condensed Matter · Physics 2009-10-31 H. Y. Lee , D. Kim , M. Y. Choi

Darwin's book, Origin of the Species has been a source of public controversy for more than hundred and fifty years. Court cases and mountains of words have not dispelled this controversy. In this paper, a quantitative approach using simple…

Populations and Evolution · Quantitative Biology 2010-06-04 Vernon Williams

Selection, the tendency of some traits to become more frequent than others in a population under the influence of some (natural or artificial) agency, is a key component of Darwinian evolution and countless other natural and social…

Populations and Evolution · Quantitative Biology 2017-05-24 Matteo Smerlak , Ahmed Youssef

Adaptation in response to selection on polygenic phenotypes may occur via subtle allele frequencies shifts at many loci. Current population genomic techniques are not well posed to identify such signals. In the past decade, detailed…

Populations and Evolution · Quantitative Biology 2014-08-19 Jeremy J. Berg , Graham Coop

This position paper argues that the Baldwin effect is widely misunderstood by the evolutionary computation community. The misunderstandings appear to fall into two general categories. Firstly, it is commonly believed that the Baldwin effect…

Machine Learning · Computer Science 2007-05-23 Peter D. Turney

Population genetic studies have found evidence for dramatic population growth in recent human history. It is unclear how this recent population growth, combined with the effects of negative natural selection, has affected patterns of…

Populations and Evolution · Quantitative Biology 2014-02-11 Kirk E. Lohmueller

In this paper, we consider a mathematical model for the evolution of neutral genetic diversity in a spatial continuum including mutations, genetic drift and either short range or long range dispersal. The model we consider is the spatial $…

Probability · Mathematics 2022-10-04 Raphaël Forien

A key question in biological systems is whether genetic diversity persists in the long run under evolutionary competition or whether a single dominant genotype emerges. Classic work by Kalmus in 1945 has established that even in simple…

Populations and Evolution · Quantitative Biology 2015-10-23 Ruta Mehta , Ioannis Panageas , Georgios Piliouras , Sadra Yazdanbod

Traditionally evolution is seen as a process where from a pool of possible variations of a population (e.g. biological species or industrial goods) a few variations get selected which survive and proliferate, whereas the others vanish.…

Populations and Evolution · Quantitative Biology 2008-09-25 Rudolf Hanel , Stefan Thurner

Here we present the first genome wide statistical test for recessive selection. This test uses explicitly non-equilibrium demographic differences between populations to infer the mode of selection. By analyzing the transient response to a…

Populations and Evolution · Quantitative Biology 2014-03-24 Daniel J. Balick , Ron Do , David Reich , Shamil R. Sunyaev