English
Related papers

Related papers: Weak correlation between fluctuations in protein d…

200 papers

We characterize the fluctuation properties of a polymer chain under external tension and the fluctuation-induced forces between two ring molecules threaded around the chain. The problem is relevant in the context of fluctuation-induced…

Soft Condensed Matter · Physics 2016-09-15 F. M. Gilles , R. Llubaroff , C. Pastorino

The correlation function in quantum systems plays a vital role in decoding their properties and gaining insights into physical phenomena. Its interpretation corresponds to the propagation of particle excitations between space-time, similar…

Quantum Physics · Physics 2024-05-14 Yuan Feng , Xi Chen , Yongcheng Ding

Fluctuations of the number of condensed atoms in a finite-size, weakly interacting Bose gas confined in a box potential are investigated for temperatures up to the critical region. The canonical partition functions are evaluated using a…

Statistical Mechanics · Physics 2015-05-13 Z. Idziaszek , L. Zawitkowski , M. Gajda , K. Rzazewski

We report the results of molecular dynamics simulations of the protein myosin carried out with an elastic network model. Quenching the system, we observe glassy behavior of a density correlation function and a density response function that…

Statistical Mechanics · Physics 2007-07-09 Kumiko Hayashi , Mitsunori Takano

Analysis of experimental kinetic dependences and results of the computer modeling of pairwise interactions in the heterogeneous system have shown that a character of its fractal property variation in the evolution process would be different…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 K. S. Baktybekov , S. G. Karstina , E. N. Vertyagina , A. A. Baratova

Fluctuations exist in any material object $A$. If $A$ has non-zero temperature $T$, one speaks about thermal fluctuations. If $A$ is at very low $T$, the fluctuations are of quantum origin. Interesting effects appear if two bodies $A$ and…

Statistical Mechanics · Physics 2025-09-30 Daniel Dantchev , Nicholay Tonchev

It has been suggested recently that `$q$-exponential' distributions which form the basis of Tsallis' non-extensive thermostatistical formalism may be viewed as mixtures of exponential (Gibbs) distributions characterized by a fluctuating…

Statistical Mechanics · Physics 2007-05-23 Hugo Touchette

Correlations and fluctuations (the latter are directly related to the 2-particle correlations) is one of the important directions in analysis of heavy ion collisions. At the current stage of RHIC exploration, when the details matter,…

Nuclear Experiment · Physics 2015-06-26 Sergei A. Voloshin

Cell motility is one of the most fundamental phenomena underlying biological processes that maintain living organisms alive. Here we introduce a simple model to describe the motility of cells which include not only time-correlated internal…

Biological Physics · Physics 2022-07-13 T. N. Azevedo , L. G. Rizzi

Atomic displacements of hydrated proteins are dominated by phonon vibrations at low temperatures and by dissipative large-amplitude motions at high temperatures. A crossover between the two regimes is known as a dynamical transition. Recent…

Biological Physics · Physics 2010-11-05 Dmitry V. Matyushov , Alexander Y. Morozov

The exponent of anomalous diffusion of virus in cytoplasm of a living cell is experimentally known to fluctuate depending on localized areas of the cytoplasm, indicating heterogeneity of diffusion. In a recent paper (Itto, 2012), a…

Biological Physics · Physics 2016-07-14 Yuichi Itto

Demixing of binary fluids subjected to slow temperature ramps shows repeated waves of nucleation which arise as a consequence of the competition between generation of supersaturation by the temperature ramp and relaxation of supersaturation…

Statistical Mechanics · Physics 2012-10-16 Izabella J. Benczik , Jürgen Vollmer

We investigate the temperature uncertainty relation in nonequilibrium probe-based temperature estimation process. We demonstrate that it is the fluctuation of heat that fundamentally determines temperature precision through the…

Quantum Physics · Physics 2024-08-13 Ning Zhang , Si-Yuan Bai , Chong Chen

On the long nuclear time scale of stellar main-sequence evolution, even weak mixing processes can become relevant for redistributing chemical species in a star. We investigate a process of "differential heating," which occurs when a…

Solar and Stellar Astrophysics · Physics 2015-06-17 R. Andrássy , H. C. Spruit

The interactions of tiny objects with their environment are dominated by thermal fluctuations. Guided by theory and assisted by micromanipulation tools, scientists have begun to study such interactions in detail.

Statistical Mechanics · Physics 2009-11-11 C. Bustamante , J. Liphardt , F. Ritort

We derive a general lower bound on distributions of entropy production in interacting active matter systems. The bound is tight in the limit that interparticle correlations are small and short-ranged, which we explore in four canonical…

Statistical Mechanics · Physics 2021-02-03 Trevor GrandPre , Katherine Klymko , Kranthi K. Mandadapu , David T. Limmer

Fluctuations due to a super-position of uncorrelated Lorentzian pulses with a random distribution of amplitudes and duration times are considered. These are demonstrated to be strongly intermittent in the limit of weak pulse overlap,…

Plasma Physics · Physics 2018-03-14 O. E. Garcia , A. Theodorsen

The first-principle theory of electron dephasing by disorder-induced two state fluctuators is developed. There exist two mechanisms of dephasing. First, dephasing occurs due to direct transitions between the defect levels caused by…

Mesoscale and Nanoscale Physics · Physics 2009-11-07 V. V. Afonin , J. Bergli , Y. M. Galperin , V. L. Gurevich , V. I. Kozub

In the course of various biological processes, specific DNA-binding proteins must find a particular target sequence/protein or a damaged site on the DNA efficiently. DNA-binding proteins perform this task based on diffusion. Yet,…

Biological Physics · Physics 2021-02-24 Seongyu Park , O-chul Lee , Xavier Durang , Jae-Hyung Jeon

We study the comparative importance of thermal to non-thermal fluctuations for membrane-based models in the linear regime. Our results, both in 1+1 and 2+1 dimensions, suggest that non-thermal fluctuations dominate thermal ones only when…

Statistical Mechanics · Physics 2011-09-28 Amit K. Chattopadhyay