Related papers: Knot probabilities in equilateral random polygons
We present a computer simulation study of the compact self-avoiding loops as regards their length and topological state. We use a Hamiltonian closed path on the cubic-shaped segment of a 3D cubic lattice as a model of a compact polymer. The…
We explore the application of automated reasoning techniques to unknot detection, a classical problem of computational topology. We adopt a two-pronged experimental approach, using a theorem prover to try to establish a positive result…
In this paper we investigate the Alexander polynomial of (1,1)-knots, which are knots lying in a 3-manifold with genus one at most, admitting a particular decomposition. More precisely, we study the connections between the Alexander…
Three-dimensional three-colour percolation on a lattice made of tetrahedra is a direct generalization of two-dimensional two-colour percolation on the triangular lattice. The interfaces between one-colour clusters are made of bicolour…
We compare Monte Carlo simulations of knotted and unknotted polymers whose ends are connected to two parallel walls. The force $f$ exerted on the polymer is measured as a function of the separation $R$ between the walls. For unknotted…
We construct knot invariants on the basis of ascribing Euclidean geometric values to a triangulation of sphere S^3 where the knot lies. The main new feature of this construction compared to the author's earlier papers on manifold invariants…
We study the dynamics of a knot in a semiflexible polymer confined to a narrow channel of width comparable to the polymers' persistence length. Using a combination of Brownian dynamics simulations and a coarse-grained stochastic model, we…
We consider the expected value for the total curvature of a random closed polygon. Numerical experiments have suggested that as the number of edges becomes large, the difference between the expected total curvature of a random closed…
A polynomial knot is a smooth embedding $\kappa: \real \to \real^n$ whose components are polynomials. The case $n = 3$ is of particular interest. It is both an object of real algebraic geometry as well as being an open ended topological…
The knotting probability is defined by the probability with which an $N$-step self-avoiding polygon (SAP) with a fixed type of knot appears in the configuration space. We evaluate these probabilities for some knot types on a simple cubic…
The role of the topology and its relation with the geometry of biopolymers under different physical conditions is a nontrivial and interesting problem. Aiming at understanding this issue for a related simpler system, we use Monte Carlo…
This article provides an overview of relative strengths of polynomial invariants of knots and links, such as the Alexander, Jones, Homflypt, and Kaufman two-variable polynomial, Khovanov homology, factorizability of the polynomials, and…
In this paper we study a model of random knots obtained by fixing a space curve in $n$-dimensional Euclidean space with $n>3$, and orthogonally projecting the space curve on to random $3$ dimensional subspaces. By varying the space curve we…
A veritable zoo of different knots is seen in the ensemble of looped polymer chains, whether created computationally or observed in vitro. At short loop lengths, the spectrum of knots is dominated by the trivial knot (unknot). The…
We generalize the classical study of Alexander polynomials of smooth or PL locally-flat knots to PL knots that are not necessarily locally-flat. We introduce three families of generalized Alexander polynomials and study their properties.…
We find that Alexander polynomial of a ribbon knot in $ \mathbb{Z}HS^3 $ is determined by the intrinsic singularity information of its ribbon, and give a formula to calculate Alexander polynomial of a ribbon knot by that. We define half…
It is known that the Alexander polynomial detects fibered knots and 3-manifolds that fiber over the circle. In this note, we show that when the Alexander polynomial becomes inconclusive, the notion of "knot adjacency", studied in the paper…
We have evaluated by numerical simulation the average size $R_K$ of random polygons of fixed knot topology $K = \emptyset, 3_1, 3_1\sharp4_1$, and we have confirmed the scaling law $R^2_K \sim N^{2\nu_K}$ for the number $N$ of polygonal…
The mock Alexander polynomial is an extension of the classical Alexander polynomial, defined and studied for (virtual) knots and knotoids by the second and third authors. In this paper we consider the mock Alexander polynomial for…
We probe the character of knotting in open, confined polymers, assigning knot types to open curves by identifying their projections as virtual knots. In this sense, virtual knots are transitional, lying in between classical knot types,…