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Dynamical systems in biology are complex, and one often does not have comprehensive knowledge about the interactions involved. Chemical reaction network (CRN) inference aims to identify, from observing species concentrations over time, the…

Methodology · Statistics 2026-04-15 Yong See Foo , Adriana Zanca , Jennifer A. Flegg , Ivo Siekmann

The phase-resetting curve (PRC) describes the response of a neural oscillator to small perturbations in membrane potential. Its usefulness for predicting the dynamics of weakly coupled deterministic networks has been well characterized.…

Dynamical Systems · Mathematics 2015-05-13 Aushra Abouzeid , Bard Ermentrout

Learning sparse coordination graphs adaptive to the coordination dynamics among agents is a long-standing problem in cooperative multi-agent learning. This paper studies this problem and proposes a novel method using the variance of payoff…

Machine Learning · Computer Science 2022-06-15 Tonghan Wang , Liang Zeng , Weijun Dong , Qianlan Yang , Yang Yu , Chongjie Zhang

In this paper we revisit random linear under-determined systems with sparse solutions. We consider $\ell_1$ optimization heuristic known to work very well when used to solve these systems. A collection of fundamental results that relate to…

Optimization and Control · Mathematics 2016-12-20 Mihailo Stojnic

Neuronal responses to complex stimuli and tasks can encompass a wide range of time scales. Understanding these responses requires measures that characterize how the information on these response patterns are represented across multiple…

Neurons and Cognition · Quantitative Biology 2019-12-23 Ryan John Cubero , Matteo Marsili , Yasser Roudi

AUC (Area under the ROC curve) is an important performance measure for applications where the data is highly imbalanced. Learning to maximize AUC performance is thus an important research problem. Using a max-margin based surrogate loss…

Artificial Intelligence · Computer Science 2016-12-28 Vishal Kakkar , Shirish K. Shevade , S Sundararajan , Dinesh Garg

A suboptimal active disturbance rejection controller (S-ADRC) is proposed for second-order systems with unknown time-varying nonlinear dynamics. The output-feedback controller guarantees a global convergence to the vicinity of an optimal…

Optimization and Control · Mathematics 2022-06-22 Amir Shakouri , M. Reza Emami

Supervised learning with large-scale data usually leads to complex optimization problems, especially for classification tasks with multiple classes. Stochastic subgradient methods can enable efficient learning with a large number of samples…

Machine Learning · Computer Science 2025-11-25 Kartheek Bondugula , Santiago Mazuelas , Aritz Pérez

Understanding the emergent behavior of chemical reaction networks (CRNs) is a fundamental aspect of biology and its origin from inanimate matter. A closed CRN monotonically tends to thermal equilibrium, but when it is opened to external…

Molecular Networks · Quantitative Biology 2024-05-16 Masanari Shimada , Pegah Behrad , Eric De Giuli

High\-cardinality categorical variables pose significant challenges in machine learning, particularly in terms of computational efficiency and model interpretability. Traditional one\-hot encoding often results in high\-dimensional sparse…

Machine Learning · Computer Science 2025-01-13 Zixuan Liang

Regularized variants of Principal Components Analysis, especially Sparse PCA and Functional PCA, are among the most useful tools for the analysis of complex high-dimensional data. Many examples of massive data, have both sparse and…

Machine Learning · Statistics 2019-08-21 Genevera I. Allen , Michael Weylandt

This paper introduces Relative Predictive Coding (RPC), a new contrastive representation learning objective that maintains a good balance among training stability, minibatch size sensitivity, and downstream task performance. The key to the…

Machine Learning · Computer Science 2021-04-14 Yao-Hung Hubert Tsai , Martin Q. Ma , Muqiao Yang , Han Zhao , Louis-Philippe Morency , Ruslan Salakhutdinov

Predicting human motion in unstructured and dynamic environments is difficult as humans naturally exhibit complex behaviors that can change drastically from one environment to the next. In order to alleviate this issue, we propose to encode…

Robotics · Computer Science 2019-07-01 Philipp Kratzer , Marc Toussaint , Jim Mainprice

The usual identification of reactive trajectories for the calculation of reaction rates requires very time-consuming simulations, particularly if the environment presents memory effects. In this paper, we develop a new method that permits…

Chaotic Dynamics · Physics 2016-09-12 Thomas Bartsch , F. Revuelta , R. M. Benito , F. Borondo

Robust principal component analysis (RPCA) is a widely used technique for recovering low-rank structure from matrices with missing entries and sparse, possibly large-magnitude corruptions. Although numerous algorithms achieve accurate point…

Methodology · Statistics 2026-03-17 Liangliang Yuan , Lei Wang , Quan Kong , Liuhua Peng

Resource-limited robots face significant challenges in executing computationally intensive tasks, such as locomotion and manipulation, particularly for real-time optimal control algorithms like Model Predictive Control (MPC). This paper…

The principle of Maximal Coding Rate Reduction (MCR$^2$) has recently been proposed as a training objective for learning discriminative low-dimensional structures intrinsic to high-dimensional data to allow for more robust training than…

Machine Learning · Computer Science 2022-04-04 Christina Baek , Ziyang Wu , Kwan Ho Ryan Chan , Tianjiao Ding , Yi Ma , Benjamin D. Haeffele

High-dimensional data is common in multiple areas, such as health care and genomics, where the number of features can be tens of thousands. In such scenarios, the large number of features often leads to inefficient learning. Constraint…

Machine Learning · Statistics 2023-06-13 Kartheek Bondugula , Santiago Mazuelas , Aritz Pérez

Stochastic reaction networks are mathematical models with a wide range of applications in biochemistry, ecology, and epidemiology, and are often complex to analyze. Except for some special cases, it is generally difficult to predict how the…

Probability · Mathematics 2026-04-02 Daniele Cappelletti , Giulio Cuniberti , Paola Siri

This study investigates the capabilities of Cyclic Redundancy Checks(CRCs) to detect burst and random errors. Researchers have favored these error detection codes throughout the evolution of computing and have implemented them in…

Networking and Internet Architecture · Computer Science 2022-05-24 Waylon Jepsen