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Astrophysical simulations are computation, memory, and thus energy intensive, thereby requiring new hardware advances for progress. Stony Brook University recently expanded its computing cluster "SeaWulf" with an addition of 94 new nodes…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-30 Joshua Martin , Catherine Feldman , Eva Siegmann , Tony Curtis , David Carlson , Firat Coskun , Daniel Wood , Raul Gonzalez , Robert J. Harrison , Alan C. Calder

Modern OpenMP threading techniques are used to convert the MPI-only Hartree-Fock code in the GAMESS program to a hybrid MPI/OpenMP algorithm. Two separate implementations that differ by the sharing or replication of key data structures…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-08-15 Vladimir Mironov , Yuri Alexeev , Kristopher Keipert , Michael D'mello , Alexander Moskovsky , Mark S. Gordon

We present an expanded study of the performance of FLASH when using Linux Kernel Hugepages on Ookami, an HPE Apollo 80 A64FX platform. FLASH is a multi-scale, multi-physics simulation code written principally in modern Fortran and makes use…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-09-19 Catherine Feldman , Smeet Chheda , Alan C. Calder , Eva Siegmann , John Dey , Tony Curtis , Robert J. Harrison

The A64FX CPU powers the current number one supercomputer on the Top500 list. Although it is a traditional cache-based multicore processor, its peak performance and memory bandwidth rival accelerator devices. Generating efficient code for…

Performance · Computer Science 2021-08-05 Christie L. Alappat , Jan Laukemann , Thomas Gruber , Georg Hager , Gerhard Wellein , Nils Meyer , Tilo Wettig

We present our experience with the modernization on the GR-MHD code BHAC, aimed at improving its novel hybrid (MPI+OpenMP) parallelization scheme. In doing so, we showcase the use of performance profiling tools usable on x86 (Intel-based)…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-08-30 Salvatore Cielo , Oliver Porth , Luigi Iapichino , Anupam Karmakar , Hector Olivares , Chun Xia

This paper presents a comprehensive comparison of three dominant parallel programming models in High Performance Computing (HPC): Message Passing Interface (MPI), Open Multi-Processing (OpenMP), and Compute Unified Device Architecture…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-06-19 Nizar ALHafez , Ahmad Kurdi

Bridge++ is a general-purpose code set for lattice QCD simulations aiming at a readable, extensible, and portable code while keeping practical high performance. The new version 2.0 employs machine-dependent optimization, enabling flexible…

High Energy Physics - Lattice · Physics 2023-03-13 Tatsumi Aoyama , Issaku Kanamori , Kazuyuki Kanaya , Hideo Matsufuru , Yusuke Namekawa

Arm technology is becoming increasingly important in HPC. Recently, Fugaku, an \arm-based system, was awarded the number one place in the Top500 list. Raspberry Pis provide an inexpensive platform to become familiar with this architecture.…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-04-13 Nikunj Gupta , Steve R. Brandt , Bibek Wagle , Nanmiao , Alireza Kheirkhahan , Patrick Diehl , Hartmut Kaiser , Felix W. Baumann

A comparison of PGI OpenACC, FORTRAN CUDA, and Nvidia CUDA pseudospectral methods on a single GPU and GCC FORTRAN on single and multiple CPU cores is reported. The GPU implementations use CuFFT and the CPU implementations use FFTW. Porting…

Computational Physics · Physics 2012-08-14 B. Cloutier , B. K. Muite , P. Rigge

The advent of computationally demanding algorithms and high data rate instruments in new space applications pushes the space industry to explore disruptive solutions for on-board data processing. We examine heterogeneous computing…

The simplex algorithm has been successfully used for many years in solving linear programming (LP) problems. Due to the intensive computations required (especially for the solution of large LP problems), parallel approaches have also…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-11-22 Basilis Mamalis , Marios Perlitis

When designing modern embedded computing systems, most software programmers choose to use multicore processors, possibly in combination with general-purpose graphics processing units (GPGPUs) and/or hardware accelerators. They also often…

Hardware Architecture · Computer Science 2015-08-31 Lesley Shannon , Eric Matthews , Nicholas Doyle , Alexandra Fedorova

The Intel Xeon Phi manycore processor is designed to provide high performance matrix computations of the type often performed in data analysis. Common data analysis environments include Matlab, GNU Octave, Julia, Python, and R. Achieving…

Fast Multipole Methods (FMM) are a fundamental operation for the simulation of many physical problems. The high performance design of such methods usually requires to carefully tune the algorithm for both the targeted physics and the…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-06-04 Emmanuel Agullo , Béranger Bramas , Olivier Coulaud , Eric Darve , Matthias Messner , Takahashi Toru

Fortran's prominence in scientific computing requires strategies to ensure both that legacy codes are efficient on high-performance computing systems, and that the language remains attractive for the development of new high-performance…

Instrumentation and Methods for Astrophysics · Physics 2024-09-13 James McKevitt , Eduard I. Vorobyov , Igor Kulikov

Shared memory multiprocessors come back to popularity thanks to rapid spreading of commodity multi-core architectures. As ever, shared memory programs are fairly easy to write and quite hard to optimise; providing multi-core programmers…

Distributed, Parallel, and Cluster Computing · Computer Science 2009-09-10 Marco Aldinucci , Massimo Torquati , Massimiliano Meneghin

VSIPL and OpenMP are two open standards for portable high performance computing. VSIPL delivers optimized single processor performance while OpenMP provides a low overhead mechanism for executing thread based parallelism on shared memory…

Astrophysics · Physics 2015-05-26 Jeremy Kepner

This Article presents two optimized multi-GPU algorithms for Fock matrix construction, building on the work of Ufimtsev et al. and Barca et al. The novel algorithms, opt-UM and opt-Brc, introduce significant enhancements, including improved…

Computational Physics · Physics 2024-08-01 Elise Palethorpe , Ryan Stocks , Giuseppe M. J. Barca

Nowadays, latency-critical, high-performance applications are parallelized even on power-constrained client systems to improve performance. However, an important scenario of fine-grained tasking on simultaneous multithreading CPU cores in…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-03 Denis Los , Igor Petushkov

AMD Instinct$^\text{TM}$ MI300A is the world's first data center accelerated processing unit (APU) with memory shared between the AMD "Zen 4" EPYC$^\text{TM}$ cores and third generation CDNA$^\text{TM}$ compute units. A single memory space…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-02 Suyash Tandon , Leopold Grinberg , Gheorghe-Teodor Bercea , Carlo Bertolli , Mark Olesen , Simone Bnà , Nicholas Malaya