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Concurrent with advancements in molecular communication (MC), bacterial communication is emerging as a key area of interest. Given the frequent use of bacteria in various MC models, it is essential to have a thorough grasp of their…

Signal Processing · Electrical Eng. & Systems 2024-12-18 B. Yagmur Koca , Ozgur B. Akan

Strong control over experimental conditions in microfluidic channels provides a unique opportunity to study and optimize membraneless microbial fuel cells (MFCs), particularly with respect to the role of flow. However, improved performance…

Molecular communication (MC) has promising potential and a wide range of applications. However, odor-based communication which is common in nature, has not been sufficiently examined within the context of MC, yet. In this paper, we…

Emerging Technologies · Computer Science 2024-11-01 Fatih E. Bilgen , Ahmet B. Kilic , Ozgur B. Akan

Digital microfluidic biochips (DMFBs) constitute modern generation of Lab-on-Chip (LoC) devices aimed at automation, miniaturization and cost-affordability of biochemistry and laboratory procedures. Over the course of past few years there…

Emerging Technologies · Computer Science 2020-08-25 Alireza Abdoli , Ali Jahanian

We demonstrate novel instrumentation for spontaneous Raman spectroscopy in biofluids, enabling development of a portable, automated, reliable diagnostics technique requiring minimal operator expertise to quantify disease markers. Label-free…

Biological Physics · Physics 2021-05-27 Emily E. Storey , Duxuan Wu , Amr S. Helmy

Data produced by on-chip sensors in modern SoCs contains a large amount of information such as occurring faults, aging status, accumulated radiation dose, performance characteristics, environmental and other operational parameters. Such…

Hardware Architecture · Computer Science 2023-08-31 Konstantin Shibin , Maksim Jenihhin , Artur Jutman , Sergei Devadze , Anton Tsertov

Living organisms rely on molecular networks, such as gene circuits and signaling pathways, for information processing and robust decision-making in crowded, noisy environments. Recent advances show that interacting biomolecules…

In this article we consider Bayesian parameter inference associated to partially-observed stochastic processes that start from a set B0 and are stopped or killed at the first hitting time of a known set A. Such processes occur naturally…

Computation · Statistics 2012-01-19 Ajay Jasra , Nikolas Kantas

Nanoscale biosensors are devices designed to detect analytes by combining biological components and physicochemical detectors. One of the well known methods of constructing these sensors is by using nanocantilevers. These microscopic…

Biological Physics · Physics 2014-09-16 Patrick Snyder , Amitabh Joshi , Juan D. Serna

Microbial communities play a significant role in bioremediation,plant growth,human and animal digestion,global elemental cycles including the carbon-cycle,and water treatment.They are also posed to be the engines of renewable energy via…

Emerging Technologies · Computer Science 2016-01-12 Nicolò Michelusi , James Boedicker , Mohamed Y. El-Naggar , Urbashi Mitra

Escherichia coli has long been used as a model organism due to the extensive experimental characterization of its pathways and molecular components. Take chemotaxis as an example, which allows bacteria to sense and swim in response to…

Cell Behavior · Quantitative Biology 2015-12-09 Gabriele Micali , Robert G. Endres

Developing rapid methods for pathogen detection and growth monitoring at low cell and analyte concentrations is an important goal, which numerous technologies are working towards solving. Rapid biosensors have already made a dramatic impact…

In this work, a machine learning approach for identifying the multi-omics metabolic regulatory control circuits inside the pathways is described. Therefore, the identification of bacterial metabolic pathways that are more regulated than…

Molecular Networks · Quantitative Biology 2024-04-09 Francesco Bardozzo , Pietro Lio' , Roberto Tagliaferri

We offer a theoretical design of new systems that show promise for digital biochemical computing, including realizations of error correction by utilizing redundancy, as well as signal rectification. The approach includes information…

Soft Condensed Matter · Physics 2010-10-12 L. Fedichkin , E. Katz , V. Privman

Hand-sized Deoxyribonucleic acid (DNA) sequencing machines are of growing importance in several life sciences fields as their small footprints enable a broader range of use cases than their larger, stationary counterparts. However, as…

Hardware Architecture · Computer Science 2025-10-13 Abel Beyene , Zhongpan Wu , Yunus Dawji , Karim Hammad , Ebrahim Ghafar-Zadeh , Sebastian Magierowski

Network-based biocomputation (NBC) is an alternative parallel computing paradigm that encodes combinatorial problems into a nanofabricated device's graphical network of channels, enabling cytoskeletal filaments propelled by molecular motors…

Mesoscale and Nanoscale Physics · Physics 2024-07-03 Pradheebha Surendiran , Marko Ušaj , Till Korten , Alf Månsson , Heiner Linke

In microbial studies, samples are often treated under different experimental conditions and then tested for microbial survival. A technique, dating back to the 1880's, consists of diluting the samples several times and incubating each…

Applications · Statistics 2020-03-23 J Andrés Christen , Al Parker

Recent advances in digital microfluidic (DMF) technologies offer a promising platform for a wide variety of biochemical applications, such as DNA analysis, automated drug discovery, and toxicity monitoring. For on-chip implementation of…

Emerging Technologies · Computer Science 2022-11-10 Sukanta Bhattacharjee , Ansuman Banerjee , Krishnendu Chakrabarty , Bhargab B. Bhattacharya

This manuscript presented brain-computer interface (STM32 and ADS1299) with the embedded board with sensors to monitor the subject's state and environment. To reduce power consumption and device size, we used sensors made in…

Human-Computer Interaction · Computer Science 2021-11-09 Ildar Rakhmatulin

Organ-on-a-chip (OoCs) platforms could revolutionize drug discovery and might ultimately become essential tools for precision therapy. Although many single-organ and interconnected systems have been described, the immune system has been…

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