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Data describing human interactions often suffer from incomplete sampling of the underlying population. As a consequence, the study of contagion processes using data-driven models can lead to a severe underestimation of the epidemic risk.…

Physics and Society · Physics 2015-11-19 Mathieu Génois , Christian L. Vestergaard , Ciro Cattuto , Alain Barrat

The mathematical modeling of the propagation of illnesses has an important role from both mathematical and biological points of view. In this article, we observe an SEIR-type model with a general incidence rate and a non-constant…

Numerical Analysis · Mathematics 2024-02-19 B. M. Takács , G. Svantnerné Sebestyén , I. Faragó

Mathematical modeling plays a vital role in epidemiology, offering insights into the spread and control of infectious diseases. The compartmental models developed by Kermack and McKendrick, particularly the SI (Susceptible-Infected) and SIR…

Numerical Analysis · Mathematics 2026-03-05 Berkay Özışık , Elif Demirci

Since the last century, deterministic compartmental models have emerged as powerful tools to predict and control epidemic outbreaks, in many cases helping to mitigate their impacts. A key quantity for these models is the so-called Basic…

Populations and Evolution · Quantitative Biology 2022-11-03 Àlex Giménez-Romero , Rosa Flaquer-Galmés , Manuel A. Matias

We analyse the infection-age-dependent SIR model from a numerical point of view. First, we present an algorithm for calculating the solution the infection-age-structured SIR model without demography of the background host. Second, we…

Populations and Evolution · Quantitative Biology 2020-06-29 Ralph Brinks , Annika Hoyer

Many recent efforts center on assessing the ability of real-world evidence (RWE) generated from non-randomized, observational data to produce results compatible with those from randomized controlled trials (RCTs). One noticeable endeavor is…

Methodology · Statistics 2022-11-04 Bo Zhang

In this work, we revisit the basic reproduction rate $\mathcal{R}_{0}$ definition for analysis of epidemic-non-epidemic phases describing the dynamics of the discrete stochastic version of the epidemic $SIR$ model based on the Master…

Biological Physics · Physics 2007-05-23 O. E. Aiello , M. A. A. da Silva

The basic reproduction number R0 is a concept which originated in population dynamics, mathematical epidemiology, and ecology and is closely related to the mean number of children in branching processes.We offer below three new…

Populations and Evolution · Quantitative Biology 2023-11-30 Florin Avram , Rim Adenane , Lasko Basnarkov , Matthew Johnston

The COVID-19 pandemic has been a great catastrophe that upended human lives and caused millions of deaths all over the world. The rapid spread of the virus, with its early-stage exponential growth and subsequent 'waves', caught many medical…

Populations and Evolution · Quantitative Biology 2022-05-31 Anne V. Ginzburg , Valeriy V. Ginzburg , Julia O. Ginzburg , Ana Garcia Arias , Leela Rakesh

This work provides a geometric version of the next-generation matrix method for obtaining the basic reproduction number of an epidemiological model. We exhibit a certain correspondence between any system of ODEs and Petri nets. We observe…

Populations and Evolution · Quantitative Biology 2025-08-12 Carlos Segovia

Classical compartmental models in epidemiology often assume a homogeneous population for simplicity, which neglects the inherent heterogeneity among individuals. This assumption frequently leads to inaccurate predictions when applied to…

Populations and Evolution · Quantitative Biology 2024-09-09 Ning Jiang , Weiqi Chu , Yao Li

Motivated by the question of optimal vaccine allocation strategies in heterogeneous population for epidemic models, we study various properties of the \emph{effective reproduction number}. In the simplest case, given a fixed, non-negative…

Optimization and Control · Mathematics 2022-11-23 Jean-François Delmas , Dylan Dronnier , Pierre-André Zitt

Branching processes are widely used to model evolutionary and population dynamics as well as the spread of infectious diseases. To characterize the dynamics of their growth or spread, the basic reproduction number $R_0$ has received…

Populations and Evolution · Quantitative Biology 2021-09-02 Johannes Pausch , Rosalba Garcia-Millan , Gunnar Pruessner

We argue that the time from the onset of infectiousness to infectious contact, which we call the contact interval, is a better basis for inference in epidemic data than the generation or serial interval. Since contact intervals can be…

Applications · Statistics 2023-10-24 Eben Kenah

We introduce a theoretical framework that highlights the impact of physical distancing variables such as human mobility and physical proximity on the evolution of epidemics and, crucially, on the reproduction number. In particular, in…

Physics and Society · Physics 2022-01-31 Fabio Vanni , David Lambert , Luigi Palatella

In this paper, we consider the infection-age-dependent Kermack--McKendrick model in which host individuals are distributed in a continuous state space. To provide a mathematical foundation for the heterogeneous model, we develop a…

Populations and Evolution · Quantitative Biology 2023-11-21 Hisashi Inaba

Heterogeneity is an important property of any population experiencing a disease. Here we apply general methods of the theory of heterogeneous populations to the simplest mathematical models in epidemiology. In particular, an SIR…

Populations and Evolution · Quantitative Biology 2012-02-28 Artem S Novozhilov

Compartmental epidemic models with dynamics that evolve over a graph network have gained considerable importance in recent years but analysis of these models is in general difficult due to their complexity. In this paper, we develop two…

Populations and Evolution · Quantitative Biology 2023-05-31 Sei Zhen Khong , Lanlan Su

We have proposed an SEIR compartmental mathematical model. The prime objective of this study is to analyze and forecast the pandemic in Italy for the upcoming months. The basic reproduction number has been calculated. Based on the current…

Populations and Evolution · Quantitative Biology 2021-04-06 Sumit Kumar , Sandeep Sharma , Nitu Kumari

As global living standards improve and medical technology advances, many infectious diseases have been effectively controlled. However, certain diseases, such as the recent COVID-19 pandemic, continue to pose significant threats to public…

Numerical Analysis · Mathematics 2025-02-24 Ayesha Baig , Li Zhouxin
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