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The determination of a 'folding core' can help to provide insight into the structure, flexibility, mobility and dynamics, and hence, ultimately, function of a protein - a central concern of structural biology. Changes in the folding core…

Biomolecules · Quantitative Biology 2015-04-09 J. W. Heal , R. A. Römer , C. A. Blindauer , R. B. Freedman

Heparin has been found to have antiviral activity against SARS-CoV-2. Here, by means of sliding window docking, molecular dynamics simulations and biochemical assays, we investigate the binding mode of heparin to the virus spike…

Biomolecules · Quantitative Biology 2021-07-27 Giulia Paiardi , Stefan Richter , Pasqua Oreste , Chiara Urbinati , Marco Rusnati , Rebecca C. Wade

Cell stiffness is a key determinant of how cells deform, migrate, and adapt to mechanically restrictive environments, yet existing single-cell stiffness assays remain difficult to combine with molecular analysis and downstream functional…

Cell Behavior · Quantitative Biology 2026-04-02 Yuhao Zhang , Luyao Zhao , Zhengfu Huang , Kenan Song , Xianqiao Wang , Xianyan Chen , Jin Xie , Yiping Zhao , He Li , Leidong Mao , Yong Teng , Yang Liu

We report the use of a surfactant molecule during the epitaxy of graphene on SiC(0001) that leads to the growth in an unconventional orientation, namely $R0^\circ$ rotation with respect to the SiC lattice. It yields a very high-quality…

Materials Science · Physics 2020-09-08 F. C. Bocquet , Y. -R. Lin , M. Franke , N. Samiseresht , S. Parhizkar , S. Soubatch , T. -L. Lee , C. Kumpf , F. S. Tautz

The motility of eukaryotic cells is strongly influenced by their environment, with confined cells often developing qualitatively different motility patterns from those migrating on simple two-dimensional substrates. Recent experiments,…

Cell Behavior · Quantitative Biology 2024-12-24 Pedrom Zadeh , Brian A. Camley

Cancer cells can acquire a spectrum of stable hybrid epithelial/mesenchymal (E/M) states during epithelial-mesenchymal transition (EMT). Cells in these hybrid E/M phenotypes often combine epithelial and mesenchymal features and tend to…

Cell Behavior · Quantitative Biology 2019-04-17 Dongya Jia , Xuefei Li , Federico Bocci , Shubham Tripathi , Youyuan Deng , Mohit Kumar Jolly , Jose N. Onuchic , Herbert Levine

Cancer is a systemic heterogeneous disease involving complex molecular networks. Tumor formation involves epithelial-mesenchymal transition (EMT), which promotes both metastasis and plasticity of cancer cells. Recent experiments proposed…

Molecular Networks · Quantitative Biology 2023-05-23 Zihao Chen , Jia Lu , Xing-Ming Zhao , Haiyang Yu , Chunhe Li

Cell adhesion and migration are strongly influenced by extracellular matrix (ECM) architecture and rigidity, but little is known about the concomitant influence of such environmental signals to cell responses, especially when considering…

The paper demonstrates possibility of giant enhancement of Surface Enhanced Hyper Raman Scattering on the base of qualitative consideration of electromagnetic field near some models of rough metal surfaces and of some features of the dipole…

Optics · Physics 2011-07-19 A. M. Polubotko

Deviations from linearity in the dependence of the logarithm of protein unfolding rates, $\log k_u(f)$, as a function of mechanical force, $f$, measurable in single molecule experiments, can arise for many reasons. In particular, upward…

Soft Condensed Matter · Physics 2020-12-22 Pavel I. Zhuravlev , Michael Hinczewski , D. Thirumalai

Intracellular transport is an essential function in eucaryotic cells, facilitated by motor proteins - proteins converting chemical energy into kinetic energy. It is known that motor proteins work in teams enabling unidirectional and…

Subcellular Processes · Quantitative Biology 2016-03-29 Shreyas Bhaban , Donatello Materassi , Mingang Li , Thomas Hays , Murti Salapaka

Acene molecules (anthracene, tetracene, pentacene) and fullerene (C$_{60}$) are embedded in He nanodroplets (He$_N$) and probed by EUV synchrotron radiation. When resonantly exciting the He nanodroplets, the embedded molecules M are…

Atomic and Molecular Clusters · Physics 2018-07-04 Mykola Shcherbinin , Aaron C. LaForge , Muhammad Hanif , Robert Richter , Marcel Mudrich

In this letter, we report that the special coupling between Dirac fermion and lattice vibrations, in other words, electron-phonon coupling (EPC), in silicene layers on Ag(111) surface was probed by an in-situ Raman spectroscopy. We find the…

Materials Science · Physics 2015-05-20 Jincheng Zhuang , Xun Xu , Yi Du , Kehui Wu , Lan Chen , Weichang Hao , Jiaou Wang , Wai Kong Yeoh , Xiaolin Wang , Shi Xue Dou

As a system of integrated homeostasis, life is susceptible to disruptions by visceral inflammation, which can disturb internal environment equilibrium. The role of body-spread subcutaneous fascia (scFascia) in this process is poorly…

Genomics · Quantitative Biology 2025-03-25 Haixiang Huang , Bingbing Shen , Zhenwei Zhang , Jianming Yue , Lu Mei , Qiusheng Chen

Because the constant extension ensemble of single chain molecule is not always equivalent with constant force ensemble, a model of double-stranded conformations, as in RNA molecules and $\beta$-sheets in proteins, with fixed extension…

Soft Condensed Matter · Physics 2007-05-23 Fei Liu , Luru Dai , Tao Xu , Zhong-can Ou-Yang

Collective cell movement, characterized by multiple cells that are in contact for substantial periods of time and undergo correlated motion, plays a central role in cancer and embryogenesis. Recent imaging experiments have provided…

Biological Physics · Physics 2020-06-03 Sumit Sinha , Abdul N Malmi-Kakkada , Xin Li , Himadri S. Samanta , D. Thirumalai

Genome-wide association studies (GWAS) have identified single nucleotide polymorphisms (SNPs) associated with trait diversity and disease susceptibility, yet the functional properties of many genetic variants and their molecular…

Genomics · Quantitative Biology 2018-03-21 Gary Wilk , Rosemary Braun

Collective cell migration is key during development, wound healing and metastasis and relies on coordinated cell behaviors at the group level. Src kinase is a key signalling protein for physiological functions of epithelia, as it regulates…

Tissues and Organs · Quantitative Biology 2024-10-31 Nastassia Pricoupenko , Flavia Marsigliesi , Philippe Marcq , Carles Blanch-Mercader , Isabelle Bonnet

Individual magnetic molecules are promising building blocks for quantum technologies because of their chemical tunability, nanoscale dimensions, and ability to self-assemble into ordered arrays. However, harnessing their properties in…

The detection of nuclei and cells in histology images is of great value in both clinical practice and pathological studies. However, multiple reasons such as morphological variations of nuclei or cells make it a challenging task where…

Computer Vision and Pattern Recognition · Computer Science 2021-06-28 Yibao Sun , Xingru Huang , Huiyu Zhou , Qianni Zhang
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