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This article solves two major tasks that frequently arise in the theory of electron collisions with a target molecular cation. First, it extends the energy-dependent frame transformation treatment(EDFT), which is needed to map fixed-nuclei…

Chemical Physics · Physics 2025-11-25 David Hvizdos , Roman Curik , Chris H Greene

Although a good comprehension of how cancer cells collectively migrate by following molecular rules which influence the state of cell-cell adhesion contacts has been generated, the impact of collective migration on cellular rearrangement…

Cell Behavior · Quantitative Biology 2021-09-21 Ivana Pajic-Lijakovic , Milan Milivojevic

Myoglobin modulates the binding of diatomic molecules to its heme group via hydrogen-bonding and steric interactions with neighboring residues, and is an important benchmark for computational studies of biomolecules. We have performed…

Chemical Physics · Physics 2013-05-24 Daniel J. Cole , David D. O'Regan , Mike C. Payne

Signaling pathways serve to communicate information about extracellular conditions into the cell, to both the nucleus and cytoplasmic processes to control cell responses. Genetic mutations in signaling network components are frequently…

Molecular Networks · Quantitative Biology 2021-06-15 Michael A. Kochen , Steven S. Andrews , H. Steven Wiley , Song Feng , Herbert M. Sauro

The broken inversion symmetry at the ferromagnet (FM)/heavy-metal (HM) interface leads to spin-dependent degeneracy of the energy band, forming spin-polarized surface states. As a result, the interface serves as an effective medium for…

We investigate the electron properties of the monolayer and bilayer silicene which is the honeycomb lattice consist of silicon atoms, including the optical conductivity and charged impurity scattering, due to the quasipatricle Dirac-like…

Strongly Correlated Electrons · Physics 2018-05-02 Chen-Huan Wu

This paper presents a mathematical model that explores the interactions between Cyclin-Dependent Kinase 1 (CDK1) and the Anaphase-Promoting Complex (APC) in cancer cells. Through the analysis of a dynamical system simulating the CDK1-APC…

Molecular Networks · Quantitative Biology 2025-02-27 Roumen Anguelov , Micaela Goddard , Yvette Hlophe , Kganya Letsoalo , June Serem

Drug synergy is profoundly influenced by cellular context, as variations in protein interaction landscapes and pathway activities across cell types reshape how drugs act in combination. Most existing models overlook this heterogeneity,…

Quantitative Methods · Quantitative Biology 2026-03-24 Keqin Peng , Guangxin Su , Qinshan Shi , Shuai Gao , Ren Wang , Can Chen , Jun Wen

As the past decade barely dawned, a fundamentally novel view of cancer relating to signal transduction through intracellular hormones/growth factors and their subunits began to unfold. Further along, it gained additional substance with the…

Subcellular Processes · Quantitative Biology 2007-12-19 Razvan Tudor Radulescu

Heparan sulfate (HS) is a linear, polydisperse sulfated polysaccharide belonging to the glycosaminoglycan family. HS proteoglycans are ubiquitously found at the cell surface and extracellular matrix in animal species. HS is involved in the…

Quantitative Methods · Quantitative Biology 2017-02-20 Ulrich Warttinger , Roland Krämer

We consider an evolutionary PDE system coupling the Cahn-Hilliard equation with singular potential, mass source and transport effects, to a Brinkman-type relation for the macroscopic velocity field and to a further equation describing the…

Analysis of PDEs · Mathematics 2024-11-20 Giulio Schimperna

Cells continuously probe their environment with membrane receptors, achieving subsecond adaptation of their behaviour [1-3]. Recently, several receptors, including cadherins, were found to bind ligands with a lifetime of order of one…

Cell Behavior · Quantitative Biology 2007-09-26 Anne Pierres , Anil Prakasam , Dominique Touchard , Anne-Marie Benoliel , Pierre Bongrand , Deborah Leckband

Heterogeneity in biological molecules, resulting in molecule-to-molecule variations in their dynamics and function, is an emerging theme. To elucidate the consequences of heterogeneous behavior at the single molecule level, we propose an…

Biological Physics · Physics 2017-01-24 Changbong Hyeon , Michael Hinczewski , D. Thirumalai

Living cells inherently reorganize their intracellular structures in response to mechanical cues from their environment. Among these responses, the formation of actin-based stress fibers exhibits a series of structural transitions depending…

Cell Behavior · Quantitative Biology 2026-04-20 Yuika Ueda , Shinji Deguchi

Single molecule junctions exhibit dynamic structural configurations that strongly influence their electronic and thermoelectric properties. Here, we combine conductance (G) and Seebeck coefficient (S) measurements using the novel AC based…

DNA shape readout is an important mechanism of target site recognition by transcription factors, in addition to the sequence readout. Several models of transcription factor-DNA binding which consider DNA shape have been developed in recent…

Biomolecules · Quantitative Biology 2017-11-30 Kirill Batmanov , Junbai Wang

Protein phase transitions govern numerous diseases, including neurodegenerative disorders such as Parkinson's and Alzheimer's. In Parkinson's disease, distinct species of the protein alpha-synuclein undergo phase transitions from highly…

Soft Condensed Matter · Physics 2026-01-13 Holly Masson , Massimiliano Paesani , Ioana M. Ilie

We report on the synthesis, STM imaging and theoretical studies of the structure, electronic structure and transport properties of linear chains of styrene and methyl-styrene molecules and their heterojunctions on hydrogen-terminated…

Mesoscale and Nanoscale Physics · Physics 2009-11-11 George Kirczenow , Paul G. Piva , Robert A. Wolkow

Analyses of high energy elastic pp and $\bar pp$ scattering data from CERN ISR and SPS Collider seem to provide strong evidence in favor of the gauged nonlinear sigma-model of the nucleon. This model describes the nucleon as a topological…

High Energy Physics - Phenomenology · Physics 2007-05-23 M. M. Islam

Direct imaging of single molecules at nanostructured interfaces is a grand challenge, with potential to enable new, precise material architectures and technologies. Of particular interest are the structural morphology and spectroscopic…