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There is a growing need for fast and accurate methods for testing developmental neurotoxicity across several chemical exposure sources. Current approaches, such as in vivo animal studies, and assays of animal and human primary cell…

Quantitative Methods · Quantitative Biology 2020-02-26 Finn Kuusisto , Vitor Santos Costa , Zhonggang Hou , James Thomson , David Page , Ron Stewart

Recent advances in large language models (LLMs) have enabled molecular reasoning for property prediction. However, toxicity arises from complex biological mechanisms beyond chemical structure, necessitating mechanistic reasoning for…

Quantitative Methods · Quantitative Biology 2026-04-09 Jueon Park , Wonjune Jang , Chanhwi Kim , Yein Park , Jaewoo Kang

As the number of cyberattacks and their particualr nature escalate, the need for effective intrusion detection systems (IDS) has become indispensable for ensuring the security of contemporary networks. Adaptive and more sophisticated…

Cryptography and Security · Computer Science 2025-05-12 Soham Chatterjee , Satvik Chaudhary , Aswani Kumar Cherukuri

The advent of Large Language Models (LLMs) has marked significant achievements in language processing and reasoning capabilities. Despite their advancements, LLMs face vulnerabilities to data poisoning attacks, where the adversary inserts…

Machine Learning · Computer Science 2025-05-30 Xiangyu Zhou , Yao Qiang , Saleh Zare Zade , Mohammad Amin Roshani , Prashant Khanduri , Douglas Zytko , Dongxiao Zhu

We present Sequence Salience, a visual tool for interactive prompt debugging with input salience methods. Sequence Salience builds on widely used salience methods for text classification and single-token prediction, and extends this to a…

Computation and Language · Computer Science 2024-04-12 Ian Tenney , Ryan Mullins , Bin Du , Shree Pandya , Minsuk Kahng , Lucas Dixon

Large language models (LLMs) increasingly rely on external tools to perform time-sensitive tasks and real-world actions. While tool integration expands LLM capabilities, it also introduces a new prompt-injection attack surface: tool…

Cryptography and Security · Computer Science 2026-04-10 Hengkai Ye , Zhechang Zhang , Jinyuan Jia , Hong Hu

Criminals use malware to disrupt cyber-systems. The number of these malware-vulnerable systems is increasing quickly as common systems, such as vehicles, routers, and lightbulbs, become increasingly interconnected cyber-systems. To address…

Cryptography and Security · Computer Science 2019-10-07 Viktor Zenkov , Jason Laska

Continuing advances in Large Language Models (LLMs) in artificial intelligence offer important capacities in intuitively accessing and using medical knowledge in many contexts, including education and training as well as assessment and…

Computation and Language · Computer Science 2024-08-01 Roma Shusterman , Allison C. Waters , Shannon O`Neill , Phan Luu , Don M. Tucker

The reverse engineering of a complex mixture, regardless of its nature, has become significant today. Being able to quickly assess the potential toxicity of new commercial products in relation to the environment presents a genuine…

Artificial Intelligence · Computer Science 2023-11-01 Pedro Marote , Marie Martin , Anne Bonhomme , Pierre Lantéri , Yohann Clément

Virtual screening plays a critical role in modern drug discovery by enabling the identification of promising candidate molecules for experimental validation. Traditional machine learning methods such, as Support Vector Machines (SVM) and…

Machine Learning · Computer Science 2025-04-29 Radia Berreziga , Mohammed Brahimi , Khairedine Kraim , Hamid Azzoune

Machine-learning (ML) models in flow cytometry have the potential to reduce error rates, increase reproducibility, and boost the efficiency of clinical labs. While numerous ML models for flow cytometry data have been proposed, few studies…

Advances in AI, particularly LLMs, have dramatically shortened drug discovery cycles by up to 40% and improved molecular target identification. However, these innovations also raise dual-use concerns by enabling the design of toxic…

Quantitative Methods · Quantitative Biology 2025-05-26 Gertrude Hattoh , Jeremiah Ayensu , Nyarko Prince Ofori , Solomon Eshun , Darlington Akogo

Extensive bedside monitoring in Intensive Care Units (ICUs) has resulted in complex temporal data regarding patient physiology, which presents an upscale context for clinical data analysis. In the other hand, identifying the time-series…

Machine Learning · Computer Science 2023-08-25 Manel Mili , Asma Kerkeni , Asma Ben Abdallah , Mohamed Hedi Bedoui

Scoring systems are linear classification models that only require users to add or subtract a few small numbers in order to make a prediction. They are used for example by clinicians to assess the risk of medical conditions. This work…

Human-Computer Interaction · Computer Science 2019-12-02 Hans-Jürgen Profitlich , Daniel Sonntag

As toxic language becomes nearly pervasive online, there has been increasing interest in leveraging the advancements in natural language processing (NLP), from very large transformer models to automatically detecting and removing toxic…

Computation and Language · Computer Science 2020-07-02 Austin P. Wright , Omar Shaikh , Haekyu Park , Will Epperson , Muhammed Ahmed , Stephane Pinel , Diyi Yang , Duen Horng Chau

Growing number of network devices and services have led to increasing demand for protective measures as hackers launch attacks to paralyze or steal information from victim systems. Intrusion Detection System (IDS) is one of the essential…

Machine Learning · Computer Science 2019-11-27 Hyeokmin Gwon , Chungjun Lee , Rakun Keum , Heeyoul Choi

Sentence-level classification and sequential labeling are two fundamental tasks in language understanding. While these two tasks are usually modeled separately, in reality, they are often correlated, for example in intent classification and…

Computation and Language · Computer Science 2017-10-02 Mingbo Ma , Kai Zhao , Liang Huang , Bing Xiang , Bowen Zhou

Large Language models (LLMs) have emerged as powerful tools for addressing challenges across diverse domains. Notably, recent studies have demonstrated that large language models significantly enhance the efficiency of biomolecular analysis…

Computation and Language · Computer Science 2025-03-07 Jiyue Jiang , Zikang Wang , Yuheng Shan , Heyan Chai , Jiayi Li , Zixian Ma , Xinrui Zhang , Yu Li

The application of large language models (LLMs) to chemistry is frequently hampered by a "tokenization bottleneck", where tokenizers tuned on general-domain text tend to fragment chemical representations such as SMILES into semantically…

Computation and Language · Computer Science 2025-11-19 Prathamesh Kalamkar , Ned Letcher , Meissane Chami , Sahger Lad , Shayan Mohanty , Prasanna Pendse

Investors and stock market analysts face major challenges in predicting stock returns and making wise investment decisions. The predictability of equity stock returns can boost investor confidence, but it remains a difficult task. To…

Statistical Finance · Quantitative Finance 2025-07-04 Adebola K. Ojo , Ifechukwude Jude Okafor