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A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…

Artificial Intelligence · Computer Science 2014-01-16 Neil C. A. Moore , Patrick Prosser

The protection number of a plane tree is the minimal distance of the root to a leaf; this definition carries over to an arbitrary node in a plane tree by considering the maximal subtree having this node as a root. We study the the…

Combinatorics · Mathematics 2017-12-21 Clemens Heuberger , Helmut Prodinger

{\em Reoptimization} is a setting in which we are given an (near) optimal solution of a problem instance and a local modification that slightly changes the instance. The main goal is that of finding an (near) optimal solution of the…

Data Structures and Algorithms · Computer Science 2018-05-01 Davide Bilò

Let $R$ and $B$ be two disjoint sets of points in the plane where the points of $R$ are colored red and the points of $B$ are colored blue, and let $n=|R\cup B|$. A bichromatic spanning tree is a spanning tree in the complete bipartite…

Computational Geometry · Computer Science 2016-11-08 Ahmad Biniaz , Prosenjit Bose , David Eppstein , Anil Maheshwari , Pat Morin , Michiel Smid

By a well known result the treewidth of k-outerplanar graphs is at most 3k-1. This paper gives, besides a rigorous proof of this fact, an algorithmic implementation of the proof, i.e. it is shown that, given a k-outerplanar graph G, a tree…

Data Structures and Algorithms · Computer Science 2013-01-25 Ioannis Katsikarelis

We consider the minimum spanning tree problem in a setting where information about the edge weights of the given graph is uncertain. Initially, for each edge $e$ of the graph only a set $A_e$, called an uncertainty area, that contains the…

Data Structures and Algorithms · Computer Science 2008-02-21 Thomas Erlebach , Michael Hoffmann , Danny Krizanc , Matús Mihal'ák , Rajeev Raman

Treewidth is a useful tool in designing graph algorithms. Although many NP-hard graph problems can be solved in linear time when the input graphs have small treewidth, there are problems which remain hard on graphs of bounded treewidth. In…

Data Structures and Algorithms · Computer Science 2024-01-22 Huairui Chu , Bingkai Lin

We investigate the complexity of finding a transformation from a given spanning tree in a graph to another given spanning tree in the same graph via a sequence of edge flips. The exchange property of the matroid bases immediately yields…

Data Structures and Algorithms · Computer Science 2022-01-13 Nicolas Bousquet , Takehiro Ito , Yusuke Kobayashi , Haruka Mizuta , Paul Ouvrard , Akira Suzuki , Kunihiro Wasa

It is an open question whether there exists a polynomial-time algorithm for computing the rotation distances between pairs of extended ordered binary trees. The problem of computing the rotation distance between an arbitrary pair of trees,…

Data Structures and Algorithms · Computer Science 2020-01-20 Sean Cleary , Roland Maio

We consider the polyhedral properties of two spanning tree problems with additional constraints. In the first problem, it is required to find a tree with a minimum sum of edge weights among all spanning trees with the number of leaves less…

Combinatorics · Mathematics 2018-02-16 Vladimir Bondarenko , Andrei Nikolaev , Dzhambolet Shovgenov

A flip in a plane spanning tree $T$ is the operation of removing one edge from $T$ and adding another edge such that the resulting structure is again a plane spanning tree. For trees on a set of points in convex position we study two…

Computational Geometry · Computer Science 2025-08-22 Oswin Aichholzer , Joseph Dorfer , Birgit Vogtenhuber

Many popular algorithms for searching the space of leaf-labelled trees are based on tree rearrangement operations. Under any such operation, the problem is reduced to searching a graph where vertices are trees and (undirected) edges are…

Data Structures and Algorithms · Computer Science 2020-07-27 Lena Collienne , Alex Gavryushkin

Treewidth and hypertree width have proven to be highly successful structural parameters in the context of the Constraint Satisfaction Problem (CSP). When either of these parameters is bounded by a constant, then CSP becomes solvable in…

Data Structures and Algorithms · Computer Science 2022-10-14 Andre Schidler , Robert Ganian , Manuel Sorge , Stefan Szeider

Given a set $P$ of $n$ points in the plane, we solve the problems of constructing a geometric planar graph spanning $P$ 1) of minimum degree 2, and 2) which is 2-edge connected, respectively, and has max edge length bounded by a factor of 2…

Discrete Mathematics · Computer Science 2011-12-16 Stefan Dobrev , Evangelos Kranakis , Danny Krizanc , Oscar Morales-Ponce , Ladislav Stacho

This paper deals with the multiobjective version of the optimal spanning tree problem. More precisely, we are interested in determining the optimal spanning tree according to an Ordered Weighted Average (OWA) of its objective values. We…

Data Structures and Algorithms · Computer Science 2009-11-02 Lucie Galand , Olivier Spanjaard

Computing a Euclidean minimum spanning tree of a set of points is a seminal problem in computational geometry and geometric graph theory. We combine it with another classical problem in graph drawing, namely computing a monotone geometric…

Computational Geometry · Computer Science 2024-11-26 Emilio Di Giacomo , Walter Didimo , Eleni Katsanou , Lena Schlipf , Antonios Symvonis , Alexander Wolff

Consider a set of labels $L$ and a set of trees ${\mathcal T} = \{{\mathcal T}^{(1), {\mathcal T}^{(2), ..., {\mathcal T}^{(k) \$ where each tree ${\mathcal T}^{(i)$ is distinctly leaf-labeled by some subset of $L$. One fundamental problem…

Data Structures and Algorithms · Computer Science 2008-02-21 Viet Tung Hoang , Wing-Kin Sung

In the Tree Deletion Set problem the input is a graph G together with an integer k. The objective is to determine whether there exists a set S of at most k vertices such that G-S is a tree. The problem is NP-complete and even NP-hard to…

Data Structures and Algorithms · Computer Science 2013-10-01 Archontia C. Giannopoulou , Daniel Lokshtanov , Saket Saurabh , Ondrej Suchy

A \emph{binary tanglegram} is a drawing of a pair of rooted binary trees whose leaf sets are in one-to-one correspondence; matching leaves are connected by inter-tree edges. For applications, for example, in phylogenetics, it is essential…

Computational Geometry · Computer Science 2010-09-17 Kevin Buchin , Maike Buchin , Jaroslaw Byrka , Martin Nöllenburg , Yoshio Okamoto , Rodrigo I. Silveira , Alexander Wolff

We study how to utilize (possibly erroneous) predictions in a model for computing under uncertainty in which an algorithm can query unknown data. Our aim is to minimize the number of queries needed to solve the minimum spanning tree…

Data Structures and Algorithms · Computer Science 2022-07-01 Thomas Erlebach , Murilo Santos de Lima , Nicole Megow , Jens Schlöter
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