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Phylogenetic networks which are, as opposed to trees, suitable to describe processes like hybridization and horizontal gene transfer, play a substantial role in evolutionary research. However, while non-treelike events need to be taken into…

Populations and Evolution · Quantitative Biology 2022-07-06 Mareike Fischer , Tom Niklas Hamann , Kristina Wicke

We investigate the computation of minimum-cost spanning trees satisfying prescribed vertex degree constraints: Given a graph $G$ and a constraint function $D$, we ask for a (minimum-cost) spanning tree $T$ such that for each vertex $v$, $T$…

Data Structures and Algorithms · Computer Science 2026-05-05 Narek Bojikian , Alexander Firbas , Robert Ganian , Hung P. Hoang , Krisztina Szilágyi

We consider the numerical taxonomy problem of fitting a positive distance function ${D:{S\choose 2}\rightarrow \mathbb R_{>0}}$ by a tree metric. We want a tree $T$ with positive edge weights and including $S$ among the vertices so that…

Data Structures and Algorithms · Computer Science 2022-03-14 Vincent Cohen-Addad , Debarati Das , Evangelos Kipouridis , Nikos Parotsidis , Mikkel Thorup

In this experimental study we consider Steiner tree approximations that guarantee a constant approximation of ratio smaller than $2$. The considered greedy algorithms and approaches based on linear programming involve the incorporation of…

Data Structures and Algorithms · Computer Science 2015-12-10 Stephan Beyer , Markus Chimani

Tree projections provide a unifying framework to deal with most structural decomposition methods of constraint satisfaction problems (CSPs). Within this framework, a CSP instance is decomposed into a number of sub-problems, called views,…

Artificial Intelligence · Computer Science 2017-11-15 Georg Gottlob , Gianlugi Greco , Francesco Scarcello

We define a search problem on trees that closely captures the backtracking behavior of all current practical graph isomorphism algorithms. Given two trees with colored leaves, the goal is to find two leaves of matching color, one in each of…

Data Structures and Algorithms · Computer Science 2020-11-04 Markus Anders , Pascal Schweitzer

Suppose we have n keys, n access probabilities for the keys, and n+1 access probabilities for the gaps between the keys. Let h_min(n) be the minimal height of a binary search tree for n keys. We consider the problem to construct an optimal…

Data Structures and Algorithms · Computer Science 2010-11-08 Peter Becker

We concern the problem of modifying the edge lengths of a tree in minimum total cost so that the prespecified $p$ vertices become the $p$-maxian with respect to the new edge lengths. This problem is called the inverse $p$-maxian problem on…

Optimization and Control · Mathematics 2015-05-20 Kien Trung Nguyen

Given a set of colored points in the plane, we ask if there exists a crossing-free straight-line drawing of a spanning forest, such that every tree in the forest contains exactly the points of one color class. We show that the problem is…

Computational Geometry · Computer Science 2018-09-11 Philipp Kindermann , Boris Klemz , Ignaz Rutter , Patrick Schnider , André Schulz

In Polyamorous Scheduling, we are given an edge-weighted graph and must find a periodic schedule of matchings in this graph which minimizes the maximal weighted waiting time between consecutive occurrences of the same edge. This NP-hard…

Data Structures and Algorithms · Computer Science 2024-11-12 Yuriy Biktairov , Leszek Gąsieniec , Wanchote Po Jiamjitrak , Namrata , Benjamin Smith , Sebastian Wild

We study the problem of low-stretch spanning trees in graphs of bounded width: bandwidth, cutwidth, and treewidth. We show that any simple connected graph $G$ with a linear arrangement of bandwidth $b$ can be embedded into a distribution…

Data Structures and Algorithms · Computer Science 2020-04-20 Glencora Borradaile , Erin Wolf Chambers , David Eppstein , William Maxwell , Amir Nayyeri

We consider the classic problem of Network Reliability. A network is given together with a source vertex, one or more target vertices, and probabilities assigned to each of the edges. Each edge appears in the network with its associated…

Combinatorics · Mathematics 2019-03-20 Amir Kafshdar Goharshady , Fatemeh Mohammadi

Finding schedules for pairwise meetings between the members of a complex social group without creating interpersonal conflict is challenging, especially when different relationships have different needs. We formally define and study the…

Data Structures and Algorithms · Computer Science 2024-03-28 Leszek Gąsieniec , Benjamin Smith , Sebastian Wild

A graph that contains a spanning tree of diameter at most $t$ clearly admits a tree $t$-spanner, since a tree $t$-spanner of a graph $G$ is a sub tree of $G$ such that the distance between pairs of vertices in the tree is at most $t$ times…

Discrete Mathematics · Computer Science 2015-03-23 Ioannis Papoutsakis

The graph invariant EPT-sum has cropped up in several unrelated fields in later years: As an objective function for hierarchical clustering, as a more fine-grained version of the classical edge ranking problem, and, specifically when the…

Data Structures and Algorithms · Computer Science 2024-07-08 Svein Høgemo

A linear arrangement is a mapping $\pi$ from the $n$ vertices of a graph $G$ to $n$ distinct consecutive integers. Linear arrangements can be represented by drawing the vertices along a horizontal line and drawing the edges as semicircles…

Data Structures and Algorithms · Computer Science 2023-10-13 Lluís Alemany-Puig , Juan Luis Esteban , Ramon Ferrer-i-Cancho

Combining the techniques of approximation algorithms and parameterized complexity has long been considered a promising research area, but relatively few results are currently known. In this paper we study the parameterized approximability…

Data Structures and Algorithms · Computer Science 2014-02-18 Michael Lampis

We define a special case of tree decompositions for planar graphs that respect a given embedding of the graph. We study the analogous width of the resulting decomposition we call the embedded-width of a plane graph. We show both upper…

Discrete Mathematics · Computer Science 2017-03-23 Glencora Borradaile , Jeff Erickson , Hung Le , Robbie Weber

In the first part of the paper, we present an (1+\mu)-approximation algorithm to the minimum-spanning tree of points in a planar arrangement of lines, where the metric is the number of crossings between the spanning tree and the lines. The…

Computational Geometry · Computer Science 2009-09-29 Sariel Har-Peled , Piotr Indyk

We prove that there is a randomized polynomial-time algorithm that given an edge-weighted graph $G$ excluding a fixed-minor $Q$ on $n$ vertices and an accuracy parameter $\varepsilon>0$, constructs an edge-weighted graph~$H$ and an…

Data Structures and Algorithms · Computer Science 2023-04-17 Vincent Cohen-Addad , Hung Le , Marcin Pilipczuk , Michał Pilipczuk