English
Related papers

Related papers: Hyperbranched DNA clusters

200 papers

Branched junction molecule assembly of DNA nanostructures, pioneered by Seeman's laboratory in the 1980s, has become increasingly sophisticated, as have the assembly targets. A critical design step is finding minimal sets of branched…

Combinatorics · Mathematics 2021-08-03 Leyda Almodóvar , Jo Ellis-Monaghan , Amanda Harsy , Cory Johnson , Jessica Sorrells

We propose a new strategy to improve the self-assembly properties of DNA-functionalised colloids. The problem that we address is that DNA-functionalised colloids typically crystallize in a narrow temperature window, if at all. The…

Soft Condensed Matter · Physics 2013-01-22 B. M. Mognetti , M. E. Leunissen , D. Frenkel

Filamentary structures are often identified in column density maps of molecular clouds, and appear to be important for both low- and high-mass star formation. Theoretically, these structures are expected to form in regions where the…

Astrophysics of Galaxies · Physics 2023-05-03 F. D. Priestley , D. Arzoumanian , A. P. Whitworth

We introduce a formalism for computing bond percolation properties of a class of correlated and clustered random graphs. This class of graphs is a generalization of the Configuration Model where nodes of different types are connected via…

Statistical Mechanics · Physics 2017-10-06 Antoine Allard , Laurent Hébert-Dufresne , Pierre-André Noël , Vincent Marceau , Louis J. Dubé

We present a new simulation technique to study systems of polymers functionalized by reactive sites that bind/unbind forming reversible linkages. Functionalized polymers feature self-assembly and responsive properties that are unmatched by…

Soft Condensed Matter · Physics 2018-04-18 Bernardo Oyarzún , Bortolo Matteo Mognetti

Lasers based on biological materials are attracting an increasing interest in view of their use in integrated and transient photonics. DNA as optical biopolymer in combination with highly-emissive dyes has been reported to have excellent…

We consider the folding of a self-avoiding homopolymer on a lattice, with saturating hydrogen bond interactions. Our goal is to numerically evaluate the statistical distribution of the topological genus of pseudoknotted configurations. The…

Biomolecules · Quantitative Biology 2009-11-11 G. Vernizzi , P. Ribeca , H. Orland , A. Zee

The nucleation of 1,3,5-Tris(4-bromophenyl)- benzene (3BrY) occurs through the formation of amorphous intermediates. However, a detailed experimental characterization of the structural and dynamic features of such early- stage precursors is…

Soft Condensed Matter · Physics 2018-08-02 Federico Giberti , Matteo Salvalaglio , Marco Mazzotti , Michele Parrinello

Method: To examine signatures of this alpha-condensation, a compound nucleus reaction using 160, 280, and 400 MeV 16O beams impinging on a carbon target was used to investigate the 12C(16O,7a) reaction. This permits a search for…

A simple but powerful network model with $n$ nodes and $m$ partly overlapping layers is generated as an overlay of independent random graphs $G_1,\dots,G_m$ with variable sizes and densities. The model is parameterised by a joint…

Probability · Mathematics 2020-11-04 Mindaugas Bloznelis , Lasse Leskelä

Massive stars are mainly found in stellar associations. These massive star clusters occur in the heart of giant molecular clouds. The strong stellar wind activity in these objects generates large bubbles and induces collective effects that…

High Energy Astrophysical Phenomena · Physics 2016-06-22 Gilles Maurin , Alexandre Marcowith , Nukri Komin , Fabien Krayzel , Giovanni Lamanna

Sufficiently massive clumps of molecular gas collapse under self-gravity and fragment to spawn a cluster of stars that have a range of masses. We investigate observationally the early stages of formation of a stellar cluster in a massive…

Solar and Stellar Astrophysics · Physics 2015-05-27 Qizhou Zhang , Ke Wang , Xing Lu , Izaskun Jimenez-Serra

Biomolecular condensates self-assemble when proteins and nucleic acids spontaneously demix to form droplets within the crowded intracellular milieu. This simple mechanism underlies the formation of a wide variety of membraneless…

Statistical Mechanics · Physics 2021-06-30 William M. Jacobs

We use a coarse-grained molecular model to study the self-assembly process of complexes of cationic and neutral lipids with DNA molecules ("lipoplexes") - a promising nonviral carrier of DNA for gene therapy. We identify the resulting…

Soft Condensed Matter · Physics 2011-05-31 Oded Farago , Niels Grønbech-Jensen

DNA-coated particles are promising as building blocks for functional and finite-sized assemblies because they can be programmed with orthogonal interactions owing to the sequence-specific hybridization of DNA strands. To fully exploit this…

Soft Condensed Matter · Physics 2026-04-17 T. C. M. Stevens , A. van der Sluis , I. K. Voets , P. G. Moerman

Specific indications of star-formation are presented within cluster and filament galaxies that are members of the Horologium-Reticulum supercluster (HRS, z ~0.06). These indicators arise from multi-wavelength observations, primarily…

Cosmology and Nongalactic Astrophysics · Physics 2009-09-02 Matthew C. Fleenor , Melanie Johnston-Hollitt

We study the spontaneous nucleation and crystallization of linear and cyclic chains of flexibly connected hard spheres using extensive molecular dynamics simulations. To this end, we present a novel event-driven molecular dynamics…

Soft Condensed Matter · Physics 2012-06-27 Ran Ni , Marjolein Dijkstra

The most interesting step of condensation is the cluster formation up to the critical size. In a closed system, this is an instationary process, as the vapour is depleted by the emerging liquid phase. This imposes a limitation on direct…

Atmospheric and Oceanic Physics · Physics 2009-12-01 Martin Horsch , Svetlana Miroshnichenko , Jadran Vrabec

Quantum confinement of the perpendicular motion of electrons in single-crystalline metallic superconducting nanofilms splits the conduction band into a series of single-electron subbands. A distinctive feature of such a nanoscale multi-band…

Superconductivity · Physics 2015-05-28 Yajiang Chen , A. A. Shanenko , A. Perali , F. M. Peeters

The chromatin fiber is a complex of DNA and specific proteins called histones forming the first structural level of organization of eukaryotic chromosomes. In tightly organized chromatin fibers, the short segments of naked DNA linking the…

Statistical Mechanics · Physics 2016-08-16 Jean-Marc Victor , Eli Ben-Haïm , Annick Lesne