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Accurate protein structure prediction from amino-acid sequences is critical to better understanding the protein function. Recent advances in this area largely benefit from more precise inter-residue distance and orientation predictions,…

Machine Learning · Computer Science 2021-06-01 Jiaxiang Wu , Shitong Luo , Tao Shen , Haidong Lan , Sheng Wang , Junzhou Huang

This paper proposes StrEBM, a structured latent energy-based model for source-wise structured representation learning. The framework is motivated by a broader goal of promoting identifiable and decoupled latent organization by assigning…

Machine Learning · Statistics 2026-04-21 Yuan-Hao Wei

Maximum likelihood (ML) learning for energy-based models (EBMs) is challenging, partly due to non-convergence of Markov chain Monte Carlo.Several variations of ML learning have been proposed, but existing methods all fail to achieve both…

Machine Learning · Statistics 2023-04-24 Xinwei Zhang , Zhiqiang Tan , Zhijian Ou

State-of-the-art deep learning models have achieved significant performance levels on various benchmarks. However, the excellent performance comes at a cost of inefficient computational cost. Light-weight architectures, on the other hand,…

Computer Vision and Pattern Recognition · Computer Science 2021-10-22 Mohammad Akbari , Amin Banitalebi-Dehkordi , Yong Zhang

Energy-based models (EBMs) provide a powerful and flexible way of learning a joint probability distribution over data by constructing an energy surface. This energy surface enables insight extraction and conditional sampling. We apply EBMs…

Plasma Physics · Physics 2026-05-12 Phil Travis , Troy Carter

In pseudo-labeling (PL), which is a type of semi-supervised learning, pseudo-labels are assigned based on the confidence scores provided by the classifier; therefore, accurate confidence is important for successful PL. In this study, we…

Computer Vision and Pattern Recognition · Computer Science 2024-04-16 Masahito Toba , Seiichi Uchida , Hideaki Hayashi

While much work on deep latent variable models of text uses continuous latent variables, discrete latent variables are interesting because they are more interpretable and typically more space efficient. We consider several approaches to…

Computation and Language · Computer Science 2020-06-12 Shuning Jin , Sam Wiseman , Karl Stratos , Karen Livescu

Differential equations are used to model problems that originate in disciplines such as physics, biology, chemistry, and engineering. In recent times, due to the abundance of data, there is an active search for data-driven methods to learn…

Machine Learning · Computer Science 2022-05-24 K. D. Olumoyin

Energy based models (EBMs) are appealing due to their generality and simplicity in likelihood modeling, but have been traditionally difficult to train. We present techniques to scale MCMC based EBM training on continuous neural networks,…

Machine Learning · Computer Science 2020-07-01 Yilun Du , Igor Mordatch

Unsupervised ensemble learning emerged to address the challenge of combining multiple learners' predictions without access to ground truth labels or additional data. This paradigm is crucial in scenarios where evaluating individual…

Machine Learning · Computer Science 2026-01-29 Ariel Maymon , Yanir Buznah , Uri Shaham

In programming, learning code representations has a variety of applications, including code classification, code search, comment generation, bug prediction, and so on. Various representations of code in terms of tokens, syntax trees,…

Machine Learning · Computer Science 2022-05-10 Nghi D. Q. Bui , Yijun Yu

Score-based generative models have recently achieved remarkable success. While they are usually parameterized by the score, an alternative way is to use a series of time-dependent energy-based models (EBMs), where the score is obtained from…

Machine Learning · Statistics 2026-05-22 RuiKang OuYang , Louis Grenioux , José Miguel Hernández-Lobato

Decision-focused learning (DFL) was recently proposed for stochastic optimization problems that involve unknown parameters. By integrating predictive modeling with an implicitly differentiable optimization layer, DFL has shown superior…

Machine Learning · Computer Science 2022-11-28 Lingkai Kong , Jiaming Cui , Yuchen Zhuang , Rui Feng , B. Aditya Prakash , Chao Zhang

Recent efforts on Diffusion Mixture-of-Experts (MoE) models have primarily focused on developing more sophisticated routing mechanisms. However, we observe that the underlying architectural configuration space remains markedly…

Machine Learning · Computer Science 2025-12-02 Yahui Liu , Yang Yue , Jingyuan Zhang , Chenxi Sun , Yang Zhou , Wencong Zeng , Ruiming Tang , Guorui Zhou

Autoregressive models (ARMs) currently constitute the dominant paradigm for large language models (LLMs). Energy-based models (EBMs) represent another class of models, which have historically been less prevalent in LLM development, yet…

Machine Learning · Computer Science 2026-05-26 Mathieu Blondel , Michael E. Sander , Germain Vivier-Ardisson , Tianlin Liu , Vincent Roulet

Energy-based models (EBM) have become increasingly popular within computer vision. EBMs bring a probabilistic approach to training deep neural networks (DNN) and have been shown to enhance performance in areas such as calibration,…

Machine Learning · Computer Science 2023-04-05 Jacob Piland , Christopher Sweet , Priscila Saboia , Charles Vardeman , Adam Czajka

This paper is directed towards the problem of learning nonlinear ARX models based on system input--output data. In particular, our interest is in learning a conditional distribution of the current output based on a finite window of past…

Machine Learning · Computer Science 2020-12-09 Johannes N. Hendriks , Fredrik K. Gustafsson , Antônio H. Ribeiro , Adrian G. Wills , Thomas B. Schön

Physical systems whose dynamics are governed by partial differential equations (PDEs) find applications in numerous fields, from engineering design to weather forecasting. The process of obtaining the solution from such PDEs may be…

Machine Learning · Computer Science 2022-09-21 Pratyush Bhatt , Yash Kumar , Azzeddine Soulaimani

Modeling distributions of covariates, or density estimation, is a core challenge in unsupervised learning. However, the majority of work only considers the joint distribution, which has limited utility in practical situations. A more…

Machine Learning · Computer Science 2021-10-28 Ryan R. Strauss , Junier B. Oliva

We propose a novel framework for structured prediction via adversarial learning. Existing adversarial learning methods involve two separate networks, i.e., the structured prediction models and the discriminative models, in the training. The…

Computer Vision and Pattern Recognition · Computer Science 2018-10-04 Pingbo Pan , Yan Yan , Tianbao Yang , Yi Yang