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Microbiomes are complex systems comprised of many interacting species. Species can survive harsh or changing conditions by rapid adaptation, a process accelerated by the exchange of genetic material between different species through…

Populations and Evolution · Quantitative Biology 2025-09-04 Johannes Nauta , Kaitlin A. Schaal , Ying-Jie Wang , James P. J. Hall , Shai Pilosof , Manlio De Domenico

1. Climate change is altering plant phenology globally with potential deleterious impacts on animal species and entire ecosystems, yet the long-term effects of climate change on tropical leaf production remain poorly understood. 2. We…

Quantitative Methods · Quantitative Biology 2026-04-01 Laura Lüthy , Colin A. Chapman , Patrick Lauer , Patrick Omeja , Urs Kalbitzer

A common assumption in the spatial analysis of agricultural field trials is stationarity. In practice, however, this assumption is often violated due to unaccounted field effects. For instance, in plant breeding field trials, this can lead…

Methodology · Statistics 2025-12-16 Karen Wolf , Pierre Fernique , Hans-Peter Piepho

We investigate a mathematical model in crop pest management, considering plant biomass, pest, and the effect of farming awareness. The pest population is divided into two compartments: susceptible pest and infected pest. We assume that the…

Optimization and Control · Mathematics 2021-03-30 Teklebirhan Abraha , Fahad Al Basir , Legesse Lemecha Obsu , Delfim F. M. Torres

Soil moisture dynamics provide an indicator of soil health that scientists model via drydown curves. The typical modelling process requires the soil moisture time series to be manually separated into drydown segments and then exponential…

Applications · Statistics 2024-07-31 Mengyi Gong , Rebecca Killick , Christopher Nemeth , John Quinton

Due to climatic changes, excessive grazing, and deforestation, semi-arid and arid ecosystems are vulnerable to desertification and land degradation. As aridity increases, vegetation cover often self-organizes into spatial patterns before…

Populations and Evolution · Quantitative Biology 2026-04-27 David Pinto-Ramos , Marcel Gabriel Clerc , Abdelkader Makhoute , Mustapha Tlidi

In the beeswax combs of honey bees, the cells of brood, pollen, and honey have a consistent spatial pattern that is sustained throughout the life of a colony. This spatial pattern is believed to emerge from simple behavioral rules that…

Populations and Evolution · Quantitative Biology 2013-07-23 Kathryn J. Montovan , Nathaniel J. Karst , Laura E. Jones , Thomas D. Seeley

Agriculture plays a crucial role in the global economy and social stability, and accurate crop yield prediction is essential for rational planting planning and decision-making. This study focuses on crop yield Time-Series Data prediction.…

Computers and Society · Computer Science 2025-02-18 Yueru Yan , Yue Wang , Jialin Li , Jingwei Zhang , Xingye Mo

The factors contributing to the persistence and stability of life are fundamental for understanding complex living systems. Organisms are commonly challenged by harsh and fluctuating environments that are suboptimal for growth and…

Populations and Evolution · Quantitative Biology 2024-06-21 Daniel Henrik Nevermann , Claudius Gros , Jay T. Lennon

Many biological populations, such as bacterial colonies, have developed through evolution a protection mechanism, called bet-hedging, to increase their probability of survival under stressful environmental fluctutation. In this context, the…

Populations and Evolution · Quantitative Biology 2017-05-24 Masaki Ogura , Masashi Wakaiki , Harvey Rubin , Victor M. Preciado

Photosynthetic starch reserves that accumulate in Arabidopsis leaves during the day decrease approximately linearly with time at night to support metabolism and growth. We find that the rate of decrease is adjusted to accommodate variation…

We present novel analytical results about ecosystem species diversity that stem from a proposed coarse grained neutral model based on birth-death processes. The relevance of the problem lies in the urgency for understanding and synthesizing…

Populations and Evolution · Quantitative Biology 2015-06-05 Samir Suweis , Andrea Rinaldo , Amos Maritan

The foundational concepts behind the persistence of ecological communities have been based on two ecological properties: dynamical stability and feasibility. The former is typically regarded as the capacity of a community to return to an…

Populations and Evolution · Quantitative Biology 2016-01-21 Serguei Saavedra , Rudolf P. Rohr , Jens M. Olesen , Jordi Bascompte

Several theoretical models predict that spatial patterning increases ecosystem resilience. However, these predictions rely on simplifying assumptions, such as assuming isotropic and infinitely large ecosystems, and empirical evidence…

Populations and Evolution · Quantitative Biology 2026-04-06 David Pinto-Ramos , Ricardo Martinez-Garcia

Mediterranean rangelands should be conceived as socio-ecological landscapes (SEL) because of the close interaction and coevolution between socio-economic and natural systems. A significant threat to these Mediterranean rangelands is related…

The abundance of a species' population in an ecosystem is rarely stationary, often exhibiting large fluctuations over time. Using historical data on marine species, we show that the year-to-year fluctuations of population growth rate obey a…

Adaptation and Self-Organizing Systems · Physics 2015-06-02 Jie Sun , Sean P. Cornelius , John Janssen , Kimberly A. Gray , Adilson E. Motter

Experimental studies of microbial communities routinely reveal that they have multiple stable states. While each of these states is generally resilient, certain perturbations such as antibiotics, probiotics and diet shifts, result in…

Populations and Evolution · Quantitative Biology 2019-02-15 Akshit Goyal , Veronika Dubinkina , Sergei Maslov

Many of the observed species interactions embedded in ecological communities are not permanent, but are characterized by temporal changes that are observed along with abiotic and biotic variations. While work has been done describing and…

Populations and Evolution · Quantitative Biology 2016-01-21 Serguei Saavedra , Rudolf P. Rohr , Miguel A. Fortuna , Nuria Selva , Jordi Bascompte

We formulate a statistical-mechanical description of a recently introduced random planting model in which plants are represented by growing hard disks. Seedlings of negligible size are introduced at random positions in a field, grow at a…

Statistical Mechanics · Physics 2026-02-17 Julian Talbot

Dryland vegetation can survive water stress by forming spatial patterns but is often subjected to herbivory as an additional stress that puts it at risk of desertification. Understanding the mutual relationships between vegetation…

Populations and Evolution · Quantitative Biology 2026-02-17 Joydeep Singha , Hannes Uecker , Ehud Meron