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Collective rhythmic dynamics from neurons is vital for cognitive functions such as memory formation but how neurons self-organize to produce such activity is not well understood. Attractor-based models have been successfully implemented as…

Neurons and Cognition · Quantitative Biology 2013-03-22 Mark Niedringhaus , Xin Chen , Katherine Conant , Rhonda Dzakpasu

We study external, electrical perturbations and their responses in the brain dynamic network of the \textit{Caenorhabditis elegans} soil worm, given by the connectome of its large somatic nervous system. Our analysis is inspired by a…

Neurons and Cognition · Quantitative Biology 2016-02-17 Chris G. Antonopoulos

The functioning of the human brain, nervous system and heart is based on the conduction of electrical signals. These electrical signals also create magnetic fields which extend outside the human body. Highly sensitive magnetometers, such as…

Medical Physics · Physics 2022-12-07 Kasper Jensen , Bo Hjorth Bentzen , Eugene S. Polzik

The charges in live cells interact with or produce electric fields, which results in enormous dielectric responses, flexoelectricity, and related phenomena. Here we report on a contraction of schizosacchraoymces pombe (fission yeast) cells…

Subcellular Processes · Quantitative Biology 2009-11-10 Xi Yang , Andrew Beckwith

The vibrations of a collection of ions in a microtrap array can be described in terms of hopping phonons. We show theoretically that the vibrational couplings may be tailored by using a gradient of the microtrap frequencies, together with a…

Quantum Physics · Physics 2011-11-15 A. Bermudez , T. Schaetz , D. Porras

The soft character of organic materials leads to strong coupling between molecular nuclear and electronic dynamics. This coupling opens the way to control charge transport in organic electronic devices by inducing molecular vibrational…

We reduce a one-dimensional model of an active segment (AS), which is used, for instance, in the description of contraction driven cell motility on tracks, to a zero-dimensional model of an active particle (AP) characterized by two internal…

Biological Physics · Physics 2020-01-08 Pierre Recho , Thibaut Putelat , Lev Truskinovsky

The resonant activation phenomenon (RAP) in a discrete system is studied using the master equation formalism. We show that the RAP corresponds to a non-monotonic behavior of the frequency dependent first passage time probability density…

Other Condensed Matter · Physics 2007-05-23 O. Flomenbom , J. Klafter

Since the first recordings made of evoked action potentials it has become apparent that the responses of individual neurons to ongoing physiologically relevant input, are highly variable. This variability is manifested in non-stationary…

Neurons and Cognition · Quantitative Biology 2010-08-10 Avner Wallach , Danny Eytan , Asaf Gal , Christoph Zrenner , Ron Meir , Shimon Marom

Collective sensing by interacting cells is observed in a variety of biological systems, and yet a quantitative understanding of how sensory information is collectively encoded is lacking. Here we investigate the ATP-induced calcium dynamics…

Cell Behavior · Quantitative Biology 2017-09-20 Garrett D Potter , Tommy A Byrd , Andrew Mugler , Bo Sun

The action potential is widely considered a purely electrical phenomenon. However, one also finds mechanical and thermal changes that can be observed experimentally. In particular, nerve membranes become thicker and axons contract. The…

Neurons and Cognition · Quantitative Biology 2025-09-29 T. Heimburg

Much of the information processing performed by a neuron occurs in the dendritic tree. For neural systems using light for communication, it is advantageous to convert signals to the electronic domain at synaptic terminals so dendritic…

Neural and Evolutionary Computing · Computer Science 2019-04-08 Jeffrey M. Shainline

The detection of physiological activity at the microscopic level is key for understanding the function of biosystems and relating this to physical structure. Current sensing methods often rely on invasive probes to stimulate and detect…

Plants depend on the signaling of the phytohormone auxin for their development and for responding to environmental perturbations. The associated biomolecular signaling network involves a negative feedback at the level of the Aux/IAA…

Molecular Networks · Quantitative Biology 2018-01-30 Silvia Grigolon , Barbara Bravi , Olivier C. Martin

Oyster fungi \emph{Pleurotus djamor} generate actin potential like spikes of electrical potential. The trains of spikes might manifest propagation of growing mycelium in a substrate, transportation of nutrients and metabolites and…

Neurons and Cognition · Quantitative Biology 2020-08-25 Mohammad Mahdi Dehshibi , Andrew Adamatzky

An action potential is typically described as a purely electrical change that propagates along the membrane of excitable cells. However, recent experiments have demonstrated that non-linear acoustic pulses that propagate along lipid…

Biological Physics · Physics 2018-01-08 Matan Mussel , Matthias F. Schneider

The dynamical responses of Blume-Capel (S=1) ferromagnet to the plane propagating (with fixed frequency and wavelength) and standing magnetic field waves are studied sepa- rately in two dimensions by extensive Monte Carlo simulation.…

Statistical Mechanics · Physics 2016-11-23 Muktish Acharyya , Ajay Halder

Optogenetics has emerged as an exciting tool for manipulating neural activity, which in turn, can modulate behavior in live organisms. However, detecting the response to the optical stimulation requires electrophysiology with physical…

Dynamical wiring and rewiring in neural networks are carried out by activity-dependent growth and retraction of axons and dendrites, guided by gudance molecules, released by target cells. Experience-dependent structural changes in cortical…

Neurons and Cognition · Quantitative Biology 2007-05-23 Fail M. Gafarov

An advanced system of sensors/actuators should allow the direct feedback of a sensed signal into an actuation, e.g., an action potential propagation through an axon or a special cell activity might be sensed and suppressed by an actuator…

Systems and Control · Computer Science 2014-12-16 Mo Zhao , Robert H. Blick