Related papers: Theta palindromes in theta conjugates
We analyze here a particular kind of linguistic network where vertices representwords and edges stand for syntactic relationships between words. The statisticalproperties of these networks have been recently studied and various features…
We consider a sliding window $W$ over a stream of characters from some alphabet of constant size. The user wants to perform deterministic substring matching on the current sliding window content and obtain positions of the matches. We…
A subsequence of a word $w$ is a word $u$ such that $u = w[i_1] w[i_2] \dots w[i_{k}]$, for some set of indices $1 \leq i_1 < i_2 < \dots < i_k \leq \lvert w\rvert$. A word $w$ is $k$-subsequence universal over an alphabet $\Sigma$ if every…
Cyclic words are equivalence classes of cyclic permutations of ordinary words. When a group is given by a rewriting relation, a rewriting system on cyclic words is induced, which is used to construct algorithms to find minimal length…
We study a classical multitype Galton--Watson process with mutation and selection. The individuals are sequences of fixed length over a finite alphabet. On the sharp peak fitness landscape together with independent mutations per locus, we…
If w is a word in d>1 letters and G is a finite group, evaluation of w on a uniformly randomly chosen d-tuple in G gives a random variable with values in G, which may or may not be uniform. It is known that if G ranges over finite simple…
The sound inventories of the world's languages self-organize themselves giving rise to similar cross-linguistic patterns. In this work we attempt to capture this phenomenon of self-organization, which shapes the structure of the consonant…
Word $W$ is said to encounter word $V$ provided there is a homomorphism $\phi$ mapping letters to nonempty words so that $\phi(V)$ is a substring of $W$. For example, taking $\phi$ such that $\phi(h)=c$ and $\phi(u)=ien$, we see that…
Reversible Watson-Crick automata introduced by Chatterjee et.al. is a reversible variant of an Watson-Crick automata. It has already been shown that the addition of DNA properties to reversible automata significantly increases the…
For an arbitrary word $w$ on an alphabet, we can define the alternating symbol graph, $G(w)$, as the graph in which the edge $(a, b)$ is in $E$ iff the letters $a$ and $b$ alternate in the word $w$. A graph $G = (V, E)$ is said to be…
We present a base-pairing model of oligonuleotide duplex formation and show in detail its equivalence to the Nearest-Neighbour dimer methods from fits to free energy of duplex formation data for short DNA-DNA and DNA-RNA hybrids containing…
A palindrome is a string that reads the same forward and backward. A palindromic substring $w$ of a string $T$ is called a minimal unique palindromic substring (MUPS) of $T$ if $w$ occurs only once in $T$ and any proper palindromic…
Write $W^{(n)}$ to mean the $n$-letter word obtained by repeating a fixed word $W$ and let $R_n$ denote a uniformly random $n$-letter word sampled from the same alphabet as $W$. We are interested in the average length of the longest common…
A pattern $\alpha$ is a string of variables and terminal letters. We say that $\alpha$ matches a word $w$, consisting only of terminal letters, if $w$ can be obtained by replacing the variables of $\alpha$ by terminal words. The matching…
We prove a number of results on the structure and enumeration of palindromes and antipalindromes. In particular, we study conjugates of palindromes, palindromic pairs, rich words, and the counterparts of these notions for antipalindromes.
Word matches are often used in sequence comparison methods, either as a measure of sequence similarity or in the first search steps of algorithms such as BLAST or BLAT. The D2 statistic is the number of matches of words of k letters between…
A palstar (after Knuth, Morris, and Pratt) is a concatenation of even-length palindromes. We show that, asymptotically, there are $\Theta(\alpha_k^n)$ palstars of length $2n$ over a $k$-letter alphabet, where $\alpha_k$ is a constant such…
Words in some natural languages can have a composite structure. Elements of this structure include the root (that could also be composite), prefixes and suffixes with which various nuances and relations to other words can be expressed.…
We construct a new family of knot concordance invariants $\theta^{(q)}(K)$, where $q$ is a prime number. Our invariants are obtained from the equivariant Seiberg-Witten-Floer cohomology, constructed by the author and Hekmati, applied to the…
A word over an ordered alphabet is said to be clustering if identical letters appear adjacently in its Burrows-Wheeler transform. Such words are strictly related to (discrete) interval exchange transformations. We use an extended version of…