Related papers: Theta palindromes in theta conjugates
In this work, we explore the concept of Watson-Crick conjugates, also known as $\theta$-conjugates (where $\theta$ is an antimorphic involution), of words and languages. This concept extends the classical idea of conjugates by incorporating…
In this paper we define and investigate the binary word operation of strong-$\phi$-bi-catenation (denoted by $\leftrightarrows_\phi$) where $\phi$ is either a morphic or an antimorphic involution. In particular, we concentrate on the…
In this paper we study generalization of the reversal mapping realized by an arbitrary involutory antimorphism $\Theta$. It generalizes the notion of a palindrome into a $\Theta$-palindrome -- a word invariant under $\Theta$. For languages…
We study the cycle structure of words in several random permutations. We assume that the permutations are independent and that their distribution is conjugation invariant, with a good control on their short cycles. If, after successive…
Given an involutive automorphism $\theta$ of a Coxeter system $(W,S)$, let $\mathfrak{I}(\theta) \subseteq W$ denote the set of twisted involutions. We provide a minimal set of moves that can be added to the braid moves, in order to connect…
For a given finite group $G$ consisting of morphisms and antimorphisms of a free monoid $\mathcal{A}^*$, we study infinite words with language closed under the group $G$. We focus on the notion of $G$-richness which describes words rich in…
A pseudo-primitive word with respect to an antimorphic involution \theta is a word which cannot be written as a catenation of occurrences of a strictly shorter word t and \theta(t). Properties of pseudo-primitive words are investigated in…
An injective word over a finite alphabet $V$ is a sequence $w=v_1v_2\cdots v_t$ of distinct elements of $V$. The set $\mathrm{inj}(V)$ of injective words on $V$ is partially ordered by inclusion. A complex of injective words is the order…
We focus on $\Theta$-rich and almost $\Theta$-rich words over a finite alphabet $\mathcal{A}$, where $\Theta$ is an involutive antimorphism over $\mathcal{A}^*$. We show that any recurrent almost $\Theta$-rich word $\uu$ is an image of a…
Repetition avoidance has been studied since Thue's work. In this paper, we considered another type of repetition, which is called pseudo-power. This concept is inspired by Watson-Crick complementarity in DNA sequence and is defined over an…
Tandem duplication is an evolutionary process whereby a segment of DNA is replicated and proximally inserted. The different configurations that can arise from this process give rise to some interesting combinatorial questions. Firstly, we…
The Fibonacci word $W$ on an infinite alphabet was introduced in [Zhang et al., Electronic J. Combinatorics 2017 24(2), 2-52] as a fixed point of the morphism $2i\rightarrow (2i)(2i+1)$, $(2i+1) \rightarrow (2i+2)$, $i\geq 0$. Here, for any…
A double occurrence word $w$ over a finite alphabet $\Sigma$ is a word in which each alphabet letter appears exactly twice. Such words arise naturally in the study of topology, graph theory, and combinatorics. Recently, double occurrence…
In this paper we prove that for any infinite word W whose set of factors is closed under reversal, the following conditions are equivalent: (I) all complete returns to palindromes are palindromes; (II) P(n) + P(n+1) = C(n+1) - C(n) + 2 for…
Modern genomic analyses increasingly rely on pangenomes, that is, representations of the genome of entire populations. The simplest representation of a pangenome is a set of individual genome sequences. Compared to e.g. sequence graphs,…
The combinatorics of RNA plays a central role in biology. Mathematical biologists have several commonly-used models for RNA: words in a fixed alphabet (representing the primary sequence of nucleotides) and plane trees (representing the…
1-way quantum finite automata are deterministic and reversible in nature, which greatly reduces its accepting property. In fact the set of languages accepted by 1-way quantum finite automata is a proper subset of regular languages. In this…
The Watson-Crick complementary properties of DNA make DNA a useful tool for the self-assembly of various target complexes. Concepts from graph theory can be used to model the self-assembling process in which the vertices of the graph…
Watson-Crick (WK) finite automata are working on a Watson-Crick tape, that is, on a DNA molecule. A double stranded DNA molecule contains two strands, each having a 5' and a 3' end, and these two strands together form the molecule with the…
Let $A$ be a finite or countable alphabet and let $\theta$ be literal (anti)morphism onto $A^*$ (by definition, such a correspondence is determinated by a permutation of the alphabet). This paper deals with sets which are invariant under…