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Cancer cells evolve through random somatic mutations. "Beneficial" mutations which disrupt key pathways (e.g. cell cycle regulation) are subject to natural selection. Multiple mutations may lead to the same "beneficial" effect, in which…

Methodology · Statistics 2016-09-20 Paul Ginzberg , Federico Giorgi , Andrea Califano

An involution is usually defined as a mapping that is its own inverse. In this paper, we study quaternion involutions that have the additional properties of distribution over addition and multiplication. We review formal axioms for such…

Rings and Algebras · Mathematics 2007-06-13 Todd A. Ell , Stephen J. Sangwine

We prove that a random word of length $n$ over a $k$-ary fixed alphabet contains, on expectation, $\Theta(\sqrt{n})$ distinct palindromic factors. We study this number of factors, $E(n,k)$, in detail, showing that the limit…

Combinatorics · Mathematics 2016-09-13 Mikhail Rubinchik , Arseny M. Shur

We extend results regarding a combinatorial model introduced by Black, Drellich, and Tymoczko (2017+) which generalizes the folding of the RNA molecule in biology. Consider a word on alphabet $\{A_1, \overline{A}_1, \ldots, A_m,…

A two-dimensional ($2$D) word is a $2$D palindrome if it is equal to its reverse and it is an HV-palindrome if all its columns and rows are $1$D palindromes. We study some combinatorial and structural properties of HV-palindromes and its…

Discrete Mathematics · Computer Science 2019-09-18 Kalpana Mahalingam , Palak Pandoh

The combinatorics of reduced words and commutation classes plays an important role in geometric representation theory. A string polytope is a lattice polytope associated to each reduced word of the longest element $w_0$ in the symmetric…

Combinatorics · Mathematics 2020-09-17 Yunhyung Cho , Jang Soo Kim , Eunjeong Lee

We study here the so called subsequence pattern matching also known as hidden pattern matching in which one searches for a given pattern $w$ of length $m$ as a subsequence in a random text of length $n$. The quantity of interest is the…

Probability · Mathematics 2020-03-24 Svante Janson , Wojciech Szpankowski

Let $W^{(n)}$ be the $n$-letter word obtained by repeating a fixed word $W$, and let $R_n$ be a random $n$-letter word over the same alphabet. We show several results about the length of the longest common subsequence (LCS) between…

Probability · Mathematics 2021-06-07 Boris Bukh , Christopher Cox

A double occurrence word (DOW) is a word in which every symbol appears exactly twice; two DOWs are equivalent if one is a symbol-to-symbol image of the other. We consider the so called repeat pattern ($\alpha\alpha$) and the return pattern…

Combinatorics · Mathematics 2019-09-27 Daniel A. Cruz , Margherita Maria Ferrari , Natasa Jonoska , Lukas Nabergall , Masahico Saito

The factor complexity function $C_w(n)$ of a finite or infinite word $w$ counts the number of distinct factors of $w$ of length $n$ for each $n \ge 0$. A finite word $w$ of length $|w|$ is said to be trapezoidal if the graph of its factor…

Combinatorics · Mathematics 2015-02-25 Amy Glen , Florence Levé

A word $w=w_1w_2\cdots w_n$ is alternating if either $w_1<w_2>w_3<w_4>\cdots$ (when the word is up-down) or $w_1>w_2<w_3>w_4<\cdots$ (when the word is down-up). In this paper, we initiate the study of (pattern-avoiding) alternating words.…

Combinatorics · Mathematics 2015-05-18 Emma L. L. Gao , Sergey Kitaev , Philip B. Zhang

We study infinite words u over an alphabet A satisfying the property P : P(n)+ P(n+1) = 1+ #A for any n in N, where P(n) denotes the number of palindromic factors of length n occurring in the language of u. We study also infinite words…

Combinatorics · Mathematics 2013-02-12 Lubomira Balkova , Edita Pelantova , Stepan Starosta

For a Coxeter group (W,S), a permutation of the set S is called a Coxeter word and the group element represented by the product is called a Coxeter element. Moving the first letter to the end of the word is called a rotation and two Coxeter…

Combinatorics · Mathematics 2013-02-13 Henrik Eriksson , Kimmo Eriksson

Much like sentences are composed of words, words themselves are composed of smaller units. For example, the English word questionably can be analyzed as question+able+ly. However, this structural decomposition of the word does not directly…

Computation and Language · Computer Science 2018-11-13 Ryan Cotterell , Hinrich Schütze

This dissertation is about rearrangement groups: a class of groups of homeomorphisms of fractal topological spaces. Introduced in 2019 by J. Belk and B. Forrest, this class generalizes the famous trio of Thompson groups $F$, $T$ and $V$ and…

Group Theory · Mathematics 2024-12-04 Matteo Tarocchi

We count points on character varieties associated with punctured surfaces and regular semisimple generic conjugacy classes in reductive groups. We find that the number of points are palindromic polynomials. This suggests a $P=W$ conjecture…

Algebraic Geometry · Mathematics 2026-01-23 Masoud Kamgarpour , GyeongHyeon Nam , Bailey Whitbread , Stefano Giannini

Let $F= < a,b>$ be a rank two free group. A word $W(a,b)$ in $F$ is {\sl primitive} if it, along with another group element, generates the group. It is a {\sl palindrome} (with respect to $a$ and $b$) if it reads the same forwards and…

Group Theory · Mathematics 2011-02-15 Jane Gilman , Linda Keen

In this paper, we study an abelian-type property of infinite words called well distributed occurrences, or WELLDOC for short. An infinite word $w$ on a $d$-ary alphabet has the WELLDOC property if, for each factor $u$ of $w$, positive…

Discrete Mathematics · Computer Science 2026-03-10 Svetlana Puzynina , Vladimir Schavelev

Palindromes are non-empty strings that read the same forward and backward. The problem of recognizing strings that can be represented as the concatenation of even-length palindromes, the concatenation of palindromes of length at least two,…

Data Structures and Algorithms · Computer Science 2025-04-18 Gabriel Bathie , Jonas Ellert , Tatiana Starikovskaya

In this note, we provide a bijection between a new collection of words on nonnegative integers of length n and Dyck paths of length 2n-2, thus proving that this collection belongs to the Catalan family. The surprising key step in this…

Combinatorics · Mathematics 2014-05-26 Christian Stump