Related papers: The Edit Distance to $k$-Subsequence Universality

Given a word, we are interested in the structure of its contiguous subwords split into $k$ blocks of equal length, especially in the homogeneous and anti-homogeneous cases. We introduce the notion of $(\mu_1,\dots,\mu_k)$-block-patterns,…

Edit distance is a fundamental measure of distance between strings and has been widely studied in computer science. While the problem of estimating edit distance has been studied extensively, the equally important question of actually…

String similarity, longest common subsequence and shortest edit scripts are the triplets of problem that related to each other. There are different algorithms exist to generate edit script by solving longest common subsequence problem. This…

A finite set S of words over the alphabet A is called non-complete if Fact(S*) is different from A*. A word w in A* - Fact(S*) is said to be uncompletable. We present a series of non-complete sets S_k whose minimal uncompletable words have…

We study the problem of approximating edit distance in sublinear time. This is formalized as the $(k,k^c)$-Gap Edit Distance problem, where the input is a pair of strings $X,Y$ and parameters $k,c>1$, and the goal is to return YES if…

Minimizers sampling is one of the most widely-used mechanisms for sampling strings [Roberts et al., Bioinformatics 2004]. Let $S=S[1]\ldots S[n]$ be a string over a totally ordered alphabet $\Sigma$. Further let $w\geq 2$ and $k\geq 1$ be…

In this paper we explore a new hierarchy of classes of languages and infinite words and its connection with complexity classes. Namely, we say that a language belongs to the class $L_k$ if it is a subset of the catenation of $k$ languages…

Let $A$ be a nonempty finite set of $k$ integers. Given a subset $B$ of $A$, the sum of all elements of $B$, denoted by $s(B)$, is called the subset sum of $B$. For a nonnegative integer $\alpha$ ($\leq k$), let \[\Sigma_{\alpha}…

We investigate the variance of the length of the longest common subsequences of two independent random words of size $n$, where the letters of one word are i.i.d. uniformly drawn from $\{\alpha_1, \alpha_2, \cdots, \alpha_m\}$, while the…

This paper initiates the study of shortening universal cycles (u-cycles) and universal words (u-words) for permutations either by using incomparable elements, or by using non-deterministic symbols. The latter approach is similar in nature…

Let D denote an infinite alphabet -- a set that consists of infinitely many symbols. A word w = a_0 b_0 a_1 b_1 ... a_n b_n of even length over D can be viewed as a directed graph G_w whose vertices are the symbols that appear in w, and the…

In many applications, it is necessary to determine the string similarity. Edit distance[WF74] approach is a classic method to determine Field Similarity. A well known dynamic programming algorithm [GUS97] is used to calculate edit distance…

We examine words w satisfying the following property: if x is a subword of w and |x| is at least k for some fixed k, then the reversal of x is not a subword of w.

The palindromic length $\text{PL}(v)$ of a finite word $v$ is the minimal number of palindromes whose concatenation is equal to $v$. In 2013, Frid, Puzynina, and Zamboni conjectured that: If $w$ is an infinite word and $k$ is an integer…

In this paper, we design new sublinear-time algorithms for solving the gap edit distance problem and for embedding edit distance to Hamming distance. For the gap edit distance problem, we give an $\tilde{O}(\frac{n}{k}+k^2)$-time greedy…

We begin with a new analysis of formal words. Let w be a formal word in letters g_1,...,g_k. The word map associated with w maps the permutations s_1,...,s_k in S_n to the permutation obtained by replacing for each i, every occurrence of…

The Universal Similarity Metric (USM) has been demonstrated to give practically useful measures of "similarity" between sequence data. Here we have used the USM as an alternative distance metric in a K-Nearest Neighbours (K-NN) learner to…

Let $w$ be a finite word over the alphabet $\{0,1\}$. For any natural number $n$, let $s_w(n)$ denote the number of occurrence of $w$ in the binary expansion of $n$ as a scattered subsequence. We study the behavior of the partial sum…

Approximate pattern matching is a natural and well-studied problem on strings: Given a text $T$, a pattern $P$, and a threshold $k$, find (the starting positions of) all substrings of $T$ that are at distance at most $k$ from $P$. We…

Edit Distance is a classic family of dynamic programming problems, among which Time Warp Edit Distance refines the problem with the notion of a metric and temporal elasticity. A novel Improved Time Warp Edit Distance algorithm that is both…