Related papers: Comment on "Validity of path thermodynamics in rea…
When reformulated as a resource theory, thermodynamics can analyze system behaviors in the single-shot regime. In this, the work required to implement state transitions is bounded by {\alpha}-Renyi divergences and so differs in identifying…
We develop a thermodynamic framework for closed and open chemical networks applicable to non-elementary reactions that do not need to obey mass action kinetics. It only requires the knowledge of the kinetics and of the standard chemical…
Based on trajectory dependent path probability formalism in state space, we derive generalized entropy production fluctuation relations for a quantum system in the presence of measurement and feedback. We have obtained these results for…
We consider stochastic models of chemical reaction networks with time dependent input rates and several types of molecules. We prove that, in despite of strong time dependence of input rates, there is a kind of homeostasis phenomenon: far…
Quantum open systems evolve according to completely positive, trace preserving maps acting on the density operator, which can equivalently be unraveled in term of so-called quantum trajectories. These stochastic sequences of pure states…
Radical-ion-pair reactions were recently shown to manifest a host of non-trivial quantum effects accounted for by quantum measurement theory. An alternative approach purporting to describe the fundamental quantum dynamics of spin-selective…
We respond to the recent comment [arXiv:1105.1593] on our Letter [G. G. Plunk and T. Tatsuno, Phys. Rev. Lett. 106, 165003 (2011)]. The comment claims that our argument for spectral transfer direction is incomplete. The comment gives an…
Chemical reaction systems operating in nonequilibrium open-system states arise in a great number of contexts, including the study of living organisms, in which chemical reactions, in general, are far from equilibrium. Here we introduce a…
We formulate a stochastic description of entropy production in scattering theory for coherent transport. We distinguish between the information entropy change due to partial knowledge of the leads' state and the thermodynamic entropy change…
Employing the stochastic wave function method, we study quantum features of stochastic entropy production in nonequilibrium processes of open systems. It is demonstarted that continuous measurements on the environment introduce an…
We study the thermodynamics of open systems weakly driven out-of-equilibrium by nonconservative and time-dependent forces using the linear regime of stochastic thermodynamics. We make use of conservation laws to identify the potential and…
We argue that the constraints on transfers, given in the Letter [G. Plunk and T. Tatsuno, Phys. Rev. Lett. {\bf 106}, 165003 (2011)], but not correctly, do not give the transfer and/or cascade directions which however can be assisted by the…
The authors of the recent paper [Phys. Rev. A 90, 032104 (2014)] claim to have established a time continuous formulation of path integration in the CS basis free from the mentioned inconsistency. Since a few recent investigations consider…
During the past dozen years there have been numerous articles on a relation between entropy and probability which is non-additive and has a parameter $q$ that depends on the nature of the thermodynamic system under consideration. For $q=1$…
Biomolecular systems like molecular motors or pumps, transcription and translation machinery, and other enzymatic reactions can be described as Markov processes on a suitable network. We show quite generally that in a steady state the…
We study the stochastic thermodynamics of an overdamped harmonic chain, which can be viewed equivalently as a 1D Rouse chain or as an approximate model of single file diffusion. We discuss mainly two levels of description of this system:…
This article presents a heuristic combination of the local and global formulations of the second law of thermodynamics that suggests the possibility of theoretical existence of thermodynamics processes with positive and negative entropy…
We give a thermodynamically consistent description of simultaneous heat and particle transport, as well as of the associated cross-effects, in the framework of a chaotic dynamical system, a generalized multibaker map. Besides the density, a…
A consistent description of simultaneous heat and particle transport, including cross effects, and the associated entropy balance is given in the framework of a deterministic dynamical system. This is achieved by a multibaker map where,…
*First-principles derivation of the entropy production in erectric static conduction. *The second-order (symmetric) density matrix contributes to the entropy production. *New schemes of steady states formulated using a relaxation-type von…